| Definition | Burkholderia pseudomallei 668 chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_009075 |
| Length | 3,127,456 |
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The map label for this gene is oppD [H]
Identifier: 126442972
GI number: 126442972
Start: 1299762
End: 1300643
Strand: Reverse
Name: oppD [H]
Synonym: BURPS668_A1389
Alternate gene names: 126442972
Gene position: 1300643-1299762 (Counterclockwise)
Preceding gene: 126444727
Following gene: 126444054
Centisome position: 41.59
GC content: 72.68
Gene sequence:
>882_bases ATGCCCGCATCCTCCGTTTTCCCGAACACGCCGCCGCTCGCCGAGATCGAAGGGCTGCGCATCGGCTTTCGCACGCACGA CGGCGCGCTCGTCGAGGCCTTGCGCGACCTGTCGCTCACGCTCGCGCCGGGCGAGCGGCTCGGCATCGTCGGCGAATCCG GCTCCGGCAAGTCGCTGACGGGCCGCGCGCTGCTCGGCCTGCTGCCCGCCGCCGCGCAATGGCACGCGCGCGCGCTGCGC TTCGAAGGCCGCGACCTGCTCGCGCTCGGCGCGCGCGAGCGGCGCAGGCTGTGCGGCGGCGCGATGGGGATGATTCTTCA GGATCCCAAATATTCGCTGAATCCGGTCATGACGGTCGCCACGCAGATGGCCGAGGCGTTCCGGCTGCGCGAGCCCGGGC TGCGCGGCCGCGCGCTGCGCGAGCGGATCGTCGACGCGCTCGCATCGGTCGAGATCCGCGATCCGGCGCGCGTCGCCGAC GCGTATCCGCACGAGCTCTCGGGCGGGATGGGCCAGCGCGTGATGATCGCGATGATGGTATCGACGGGGCCGCGCCTGCT TGTCGCCGACGAGCCGACGTCCGCGCTCGACGTCGCGGTGTCGATGCAGGTGCTCGCGGTGCTCGACGACATGATCGCGC GCCACCGCACGGGCCTCCTGTTCATCAGCCACGATCTGCCGCTCGTCACGTCGTTCTGCGATCGCGTCGCGGTGATGTAC GCGGGGCGCGTCGTCGAGACGTGCGCGGCGCGCGACCTCGTCCACGCGGCGCATCCGTACACGCGCGGCCTGCTCGCCGC GACGCCGCCGCTCGCGAACCCGCCCGACGCGCTGCCGGTGCTCGAGCGCGATCCGGCATGGCTCACGCAGGCCGCACGAT GA
Upstream 100 bases:
>100_bases GCGACGCTGCCCGGCGCGGCGATCCTCGTCGTCAGCATCGCGTTCAACCTGCTCGGCGACGGTCTGCGCGACGTCTTCGA TCCACGCCATGGAGCCTGAC
Downstream 100 bases:
>100_bases GCGACGCACCGATGATCGACATCCGCGACGTATCGATCCGGTTCCCGACCCGCGGCGGCCACGTCGACGCGGTGCGCGGC GCGAGCCTCGCCGTCGGCGC
Product: ABC transporter ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MPASSVFPNTPPLAEIEGLRIGFRTHDGALVEALRDLSLTLAPGERLGIVGESGSGKSLTGRALLGLLPAAAQWHARALR FEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVATQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVAD AYPHELSGGMGQRVMIAMMVSTGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR
Sequences:
>Translated_293_residues MPASSVFPNTPPLAEIEGLRIGFRTHDGALVEALRDLSLTLAPGERLGIVGESGSGKSLTGRALLGLLPAAAQWHARALR FEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVATQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVAD AYPHELSGGMGQRVMIAMMVSTGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR >Mature_292_residues PASSVFPNTPPLAEIEGLRIGFRTHDGALVEALRDLSLTLAPGERLGIVGESGSGKSLTGRALLGLLPAAAQWHARALRF EGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVATQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVADA YPHELSGGMGQRVMIAMMVSTGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMYA GRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI11967971, Length=252, Percent_Identity=25.7936507936508, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789963, Length=270, Percent_Identity=43.3333333333333, Blast_Score=212, Evalue=2e-56, Organism=Escherichia coli, GI48994883, Length=280, Percent_Identity=44.2857142857143, Blast_Score=208, Evalue=3e-55, Organism=Escherichia coli, GI1787759, Length=274, Percent_Identity=41.6058394160584, Blast_Score=197, Evalue=7e-52, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=44.5283018867925, Blast_Score=196, Evalue=1e-51, Organism=Escherichia coli, GI1788506, Length=281, Percent_Identity=42.3487544483986, Blast_Score=194, Evalue=4e-51, Organism=Escherichia coli, GI1787548, Length=289, Percent_Identity=36.6782006920415, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI1787500, Length=266, Percent_Identity=38.3458646616541, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI1789962, Length=249, Percent_Identity=38.5542168674699, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1787758, Length=247, Percent_Identity=36.0323886639676, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1789890, Length=233, Percent_Identity=36.9098712446352, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI48994997, Length=252, Percent_Identity=35.3174603174603, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=36.4485981308411, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1789032, Length=234, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=8e-24, Organism=Escherichia coli, GI1786398, Length=266, Percent_Identity=30.4511278195489, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787547, Length=263, Percent_Identity=28.8973384030418, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1788761, Length=237, Percent_Identity=31.6455696202532, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081791, Length=252, Percent_Identity=30.952380952381, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=31.404958677686, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789672, Length=243, Percent_Identity=32.9218106995885, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1789991, Length=253, Percent_Identity=26.0869565217391, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=32.8767123287671, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787712, Length=239, Percent_Identity=28.4518828451883, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787089, Length=234, Percent_Identity=29.4871794871795, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=26.431718061674, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787041, Length=236, Percent_Identity=27.5423728813559, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=28.9592760180996, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788225, Length=237, Percent_Identity=31.2236286919831, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082267, Length=223, Percent_Identity=28.6995515695067, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786703, Length=213, Percent_Identity=30.9859154929577, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=30.952380952381, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI87081709, Length=222, Percent_Identity=25.6756756756757, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786319, Length=249, Percent_Identity=25.3012048192771, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787792, Length=232, Percent_Identity=29.7413793103448, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788644, Length=167, Percent_Identity=31.1377245508982, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48995001, Length=234, Percent_Identity=28.6324786324786, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI48994943, Length=252, Percent_Identity=29.3650793650794, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI87081782, Length=218, Percent_Identity=28.4403669724771, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=30.4545454545455, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790190, Length=217, Percent_Identity=26.2672811059908, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786563, Length=216, Percent_Identity=29.1666666666667, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786253, Length=218, Percent_Identity=27.9816513761468, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI212646699, Length=232, Percent_Identity=27.1551724137931, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI25146777, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193202349, Length=242, Percent_Identity=26.8595041322314, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17541710, Length=243, Percent_Identity=27.5720164609054, Blast_Score=68, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6323217, Length=242, Percent_Identity=28.5123966942149, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24641565, Length=232, Percent_Identity=30.1724137931034, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=25.3521126760563, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI85726357, Length=257, Percent_Identity=29.9610894941634, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI281363262, Length=255, Percent_Identity=27.843137254902, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 31469; Mature: 31338
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPASSVFPNTPPLAEIEGLRIGFRTHDGALVEALRDLSLTLAPGERLGIVGESGSGKSLT CCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCEEEECCCCEEEEEECCCCCCCCH GRALLGLLPAAAQWHARALRFEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVA HHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHEECCCCCCCCHHHHHH TQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVADAYPHELSGGMGQRVMIAMMV HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCCEEEEEEE STGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR HHHHHHHHHHHHHHHHCCCHHCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCC >Mature Secondary Structure PASSVFPNTPPLAEIEGLRIGFRTHDGALVEALRDLSLTLAPGERLGIVGESGSGKSLT CCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCEEEECCCCEEEEEECCCCCCCCH GRALLGLLPAAAQWHARALRFEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVA HHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHEECCCCCCCCHHHHHH TQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVADAYPHELSGGMGQRVMIAMMV HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCCEEEEEEE STGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR HHHHHHHHHHHHHHHHCCCHHCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]