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The map label for this gene is ddpC [H]

Identifier: 126444727

GI number: 126444727

Start: 1300645

End: 1301586

Strand: Reverse

Name: ddpC [H]

Synonym: BURPS668_A1390

Alternate gene names: 126444727

Gene position: 1301586-1300645 (Counterclockwise)

Preceding gene: 126443764

Following gene: 126442972

Centisome position: 41.62

GC content: 72.72

Gene sequence:

>942_bases
ATGAACGCCTCGCCCGATCACTCCCGCACGAATCCCGCCGCGACGACGCTGCGCGCGTGGCTGCTGTCCGACGCGCCCGC
CTCGCGCCGGCAGGCGACGCTCGGCCTCGCGTACCGCCGCTGGCGCCGCTTCGCCGGCAATCCGCTGAACCTTCTCGGGC
TCGCGATCCTCGCCGCGCTCGTCGCGATCGCGCTCGTCGCGCCGTTCGTCATGCCGCACGACCCGCTGCGCCAGGTGCTC
GCCGACCGGCTGCTGCCGCCCGGCTCCCCGTCGCACTGGCTCGGCACCGACCAGCTCGGCCGCGACATCCTCTCGCGTCT
GATCGCGGGCTCGCGGCTCACGCTCGGCATCGCGATCCTCGTCGTCGCGATCGTCGTGCCGATCGGGCTCGCGATCGGCA
CGACGGCCGGCTACTGCGGCGGCCTCGTCGACAGCGCGCTCATGCGGATCACCGACGTCGCGCTCGCGTTCCCGAAGATC
GTGCTCGCGCTCGCGTTCGCGGCGGCGCTCGGGCCGGGCGTCGTCAACGCGGTCGTCGCGATCTCGATCACCGCGTGGCC
CGCGTACGCGCGGCTCGCGCGCGCGGAGACGCTGCGCATCGCGAACGCGGACTTCATCCACGCGGCGCGGCTGCAAGGCG
CGTCCGATCTGCGGATCGTGCTGCGCTATGTCATGCCGCTCTGCCTGTCGTCGGTGATCGTGCGCGCGACGCTCGACATG
GCGGGCATCATCCTGACCGTCGCCGGCCTGGGCTTTCTCGGGCTCGGCGCGCAGCCGCCGAGCCCCGAATGGGGCTTCAT
GGTCGCGTCGGGCCGCAACGTGCTGCTCGACGCATGGTGGGTCGCGACGCTGCCCGGCGCGGCGATCCTCGTCGTCAGCA
TCGCGTTCAACCTGCTCGGCGACGGTCTGCGCGACGTCTTCGATCCACGCCATGGAGCCTGA

Upstream 100 bases:

>100_bases
CACGATCAATCTGCTGACCGACGCGCTCTACCGCGTGTTCGATCCGCGCGCCCGCTGACCCGGCGCGCGCCGCGCCCGTT
CGACCGAACTCATCAAGCCC

Downstream 100 bases:

>100_bases
CATGCCCGCATCCTCCGTTTTCCCGAACACGCCGCCGCTCGCCGAGATCGAAGGGCTGCGCATCGGCTTTCGCACGCACG
ACGGCGCGCTCGTCGAGGCC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNASPDHSRTNPAATTLRAWLLSDAPASRRQATLGLAYRRWRRFAGNPLNLLGLAILAALVAIALVAPFVMPHDPLRQVL
ADRLLPPGSPSHWLGTDQLGRDILSRLIAGSRLTLGIAILVVAIVVPIGLAIGTTAGYCGGLVDSALMRITDVALAFPKI
VLALAFAAALGPGVVNAVVAISITAWPAYARLARAETLRIANADFIHAARLQGASDLRIVLRYVMPLCLSSVIVRATLDM
AGIILTVAGLGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILVVSIAFNLLGDGLRDVFDPRHGA

Sequences:

>Translated_313_residues
MNASPDHSRTNPAATTLRAWLLSDAPASRRQATLGLAYRRWRRFAGNPLNLLGLAILAALVAIALVAPFVMPHDPLRQVL
ADRLLPPGSPSHWLGTDQLGRDILSRLIAGSRLTLGIAILVVAIVVPIGLAIGTTAGYCGGLVDSALMRITDVALAFPKI
VLALAFAAALGPGVVNAVVAISITAWPAYARLARAETLRIANADFIHAARLQGASDLRIVLRYVMPLCLSSVIVRATLDM
AGIILTVAGLGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILVVSIAFNLLGDGLRDVFDPRHGA
>Mature_313_residues
MNASPDHSRTNPAATTLRAWLLSDAPASRRQATLGLAYRRWRRFAGNPLNLLGLAILAALVAIALVAPFVMPHDPLRQVL
ADRLLPPGSPSHWLGTDQLGRDILSRLIAGSRLTLGIAILVVAIVVPIGLAIGTTAGYCGGLVDSALMRITDVALAFPKI
VLALAFAAALGPGVVNAVVAISITAWPAYARLARAETLRIANADFIHAARLQGASDLRIVLRYVMPLCLSSVIVRATLDM
AGIILTVAGLGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILVVSIAFNLLGDGLRDVFDPRHGA

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=284, Percent_Identity=42.9577464788732, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1787054, Length=273, Percent_Identity=41.7582417582418, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1789964, Length=275, Percent_Identity=44.3636363636364, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=40.5737704918033, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787549, Length=269, Percent_Identity=37.9182156133829, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1787498, Length=276, Percent_Identity=33.695652173913, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1788505, Length=228, Percent_Identity=31.140350877193, Blast_Score=107, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32879; Mature: 32879

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASPDHSRTNPAATTLRAWLLSDAPASRRQATLGLAYRRWRRFAGNPLNLLGLAILAAL
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VAIALVAPFVMPHDPLRQVLADRLLPPGSPSHWLGTDQLGRDILSRLIAGSRLTLGIAIL
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
VVAIVVPIGLAIGTTAGYCGGLVDSALMRITDVALAFPKIVLALAFAAALGPGVVNAVVA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
ISITAWPAYARLARAETLRIANADFIHAARLQGASDLRIVLRYVMPLCLSSVIVRATLDM
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIILTVAGLGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILVVSIAFNLLG
HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEHHHHHHHCCCHHHHHHHHHHHHHH
DGLRDVFDPRHGA
HHHHHHCCCCCCC
>Mature Secondary Structure
MNASPDHSRTNPAATTLRAWLLSDAPASRRQATLGLAYRRWRRFAGNPLNLLGLAILAAL
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VAIALVAPFVMPHDPLRQVLADRLLPPGSPSHWLGTDQLGRDILSRLIAGSRLTLGIAIL
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
VVAIVVPIGLAIGTTAGYCGGLVDSALMRITDVALAFPKIVLALAFAAALGPGVVNAVVA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
ISITAWPAYARLARAETLRIANADFIHAARLQGASDLRIVLRYVMPLCLSSVIVRATLDM
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIILTVAGLGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILVVSIAFNLLG
HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEHHHHHHHCCCHHHHHHHHHHHHHH
DGLRDVFDPRHGA
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]