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The map label for this gene is hrpB3 [H]

Identifier: 126442940

GI number: 126442940

Start: 1930322

End: 1931131

Strand: Reverse

Name: hrpB3 [H]

Synonym: BURPS668_A1993

Alternate gene names: 126442940

Gene position: 1931131-1930322 (Counterclockwise)

Preceding gene: 126444134

Following gene: 126444946

Centisome position: 61.75

GC content: 63.58

Gene sequence:

>810_bases
GTGCCGCTTCACCGCCTTGTCGTGCGGCTTCTCGGCGTGCTCGCATTGAGCGTTCTGCTTGCCGGTTGTAAGAAGGAGTT
GTATACCGGCCTGTCCGAGCAGGACGTCAACGAGATGATGGTCGCCCTCCTCGAGAACGGCGTCGACGCATCGAAGGATT
CGGCCGATGGAGGCAAGAGCTGGAAGCTGAACGTCGATGGTGATCAGCTCGTTCACGCGATGGAGGTACTGCGCACGCGT
GGTTTGCCGCGCAGCAAGTTCGACGACCTCGGCAACCTGTTCAAGAAGGACGGCCTCGTTTCGACGCCGACGGAGGAACG
GATTCGCTTCATTTACGGCATGTCGCAGGAGTTGTCGTCGACACTGTCGAAAATCGACGGCGTGCTGGTTGCACGCGTGC
AGATCGTGCTTCCGAATAACGACCCGCTTGCGCAAACAGCCAAACCGTCATCGGCGGCCGTATTCATCAAGTATCGGCCG
AGCGCCGACATCACCGCGCTGATTCCGCAGATCAAGACGCTGGTCATGCATAGCGTGGAGGGGCTGACCTACGACCAGGT
CAGCGTGACGGCGGTGGCGGCGGATGCCGTCGACCTTGCGCGATCGCGTCCTGCGGCGGTGATCATGCCGCCCTGGCTGG
TCGGGCTGTTGGCGTTCGGGGCGGTGTCGATCGCGGCGGCGGGGCTGTTTGTTGTGTCAAGGCGCCCTTGGACGAGGGCG
GGCGCACATGAAGCCGGCAGCGCAGCGCCATGGCGCAAGCGCGTCGCCGAACTCGCCGCGCACTTGCGCCGCCGTCAGCG
GGCGAACTGA

Upstream 100 bases:

>100_bases
GTCAACGCGTCGAAAACCGCGATCGAGACACTGATGAAGAACCAGTGACGCCCGACTCGATGAGTCGCCCGATGGACTGC
AAAGAATGATATTCGGACGT

Downstream 100 bases:

>100_bases
GAAGGGCGCAGTGCATGATCGCCGCATCGAGCCCGTCGCCGCATCAGCGCGCGGCTGCGCTGCTGGAGCGCTACCGACGC
AATTTCGCGAACGCCGTATG

Product: YscJ/HrcJ family type III secretion apparatus lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MPLHRLVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGDQLVHAMEVLRTR
GLPRSKFDDLGNLFKKDGLVSTPTEERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRP
SADITALIPQIKTLVMHSVEGLTYDQVSVTAVAADAVDLARSRPAAVIMPPWLVGLLAFGAVSIAAAGLFVVSRRPWTRA
GAHEAGSAAPWRKRVAELAAHLRRRQRAN

Sequences:

>Translated_269_residues
MPLHRLVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGDQLVHAMEVLRTR
GLPRSKFDDLGNLFKKDGLVSTPTEERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRP
SADITALIPQIKTLVMHSVEGLTYDQVSVTAVAADAVDLARSRPAAVIMPPWLVGLLAFGAVSIAAAGLFVVSRRPWTRA
GAHEAGSAAPWRKRVAELAAHLRRRQRAN
>Mature_268_residues
PLHRLVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGDQLVHAMEVLRTRG
LPRSKFDDLGNLFKKDGLVSTPTEERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPS
ADITALIPQIKTLVMHSVEGLTYDQVSVTAVAADAVDLARSRPAAVIMPPWLVGLLAFGAVSIAAAGLFVVSRRPWTRAG
AHEAGSAAPWRKRVAELAAHLRRRQRAN

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. Could be a part of a specific transport apparatus or a secretion apparatus that is required for pathogenicity. Hrp proteins may form a complex (tu

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 29081; Mature: 28950

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLHRLVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
WKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKDGLVSTPTEERIRFIYGMSQELSS
EEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHH
TLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVE
HHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC
GLTYDQVSVTAVAADAVDLARSRPAAVIMPPWLVGLLAFGAVSIAAAGLFVVSRRPWTRA
CCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GAHEAGSAAPWRKRVAELAAHLRRRQRAN
CCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLHRLVVRLLGVLALSVLLAGCKKELYTGLSEQDVNEMMVALLENGVDASKDSADGGKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCE
WKLNVDGDQLVHAMEVLRTRGLPRSKFDDLGNLFKKDGLVSTPTEERIRFIYGMSQELSS
EEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHH
TLSKIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVE
HHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC
GLTYDQVSVTAVAADAVDLARSRPAAVIMPPWLVGLLAFGAVSIAAAGLFVVSRRPWTRA
CCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GAHEAGSAAPWRKRVAELAAHLRRRQRAN
CCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]