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The map label for this gene is 126442937

Identifier: 126442937

GI number: 126442937

Start: 894924

End: 896435

Strand: Reverse

Name: 126442937

Synonym: BURPS668_A0916

Alternate gene names: NA

Gene position: 896435-894924 (Counterclockwise)

Preceding gene: 126442564

Following gene: 126445324

Centisome position: 28.66

GC content: 76.32

Gene sequence:

>1512_bases
ATGCCCCGTTCCTCGCCGCGGCCGCCGCCCGCGCGCGGCAAACTCCCCGCGCGGCTCGCGCGCGCGGCCGTGCTGATCGG
CCTGCTGCTCGCATGCGCGGCGGCGGCGGCGGCCGGCGCAGCCGCCGCCGCGCGCGCGCCCATCGTCGTGATCCCGGTCG
CGGGCGCGATCGGCCCGGCGAGCGCCGATTTCGTCGTCCGCGGCCTCGAGCGCGCCGCGCGCGAGCACGCGCCGCTCGCG
ATCGTCCAGCTCGACACGCCCGGCGGCCTCGACACCTCGATGCGGCAGATCATCAAGGCGATCGTCGCCTCGGGCGTGCC
CGTCGCCGCGTTCGTCGCGCCGGGCGGCGCACGCGCGGCGAGCGCCGGCACCTATATCGTCTATGCAAGCCACGTGGCGG
CGATGGCGCCCGGCACGAACCTCGGCGCGGCGTCGCCCGTGCAGCTCGGCATCGGCGGCCAGGCGCCGGCGGGCGGGCGA
CGCGAGCCTGCCGGCGCGCCCGGGGCGGCGGGCGCGGGTGCGACCGATACGGAATCGACCGAAACCCGCAAGGCGCTGCA
CGACGCGGCCGCTTACATCCGCGGCCTCGCGCAGTTGCGCGGGCGCAACGCCGAATGGGCGGAGCGCGCGGTGCGCGAGG
CGGTGAGCCTGCCCGCGAACGACGCGCTCGCACAGCACGTGGTCGACCTGCTCGCGAACGACCCGGCCGATCTCGCCGCG
AAGCTCGACGGCCGCACGATCGTCACCGCCACGGGCGCGCACCGGCTCGACACCGCGCGGGCGCCGCTCGAGACGCTCGA
GCCCGACTGGCGCAGCCGGCTGCTCGCGACGATCGCCGATCCGAGCGTCGCGCTCGTACTCGTCACGCTCGGCATGTACG
GGCTCTTCTTCGAATTCGCGAATCCCGGCTTCGTGCTGCCGGGCGTCGCGGGCGCGATCGGCCTGCTCGTCGGCCTGTTC
GCGCTGCAATTGCTGCCGATCAGCTACGCGGGCCTCGCGCTCGTGCTGCTCGGCATCGCGTTCCTGATCGCCGAGACGTT
CCTGCCGACGTTCGGCGCGCTCGGCGTGGGCGGCATCGTCGCGTTCGCGATCGGCGCGCTGATGCTGATCGACACCGACG
TGCCCGGCTACGGCGTGCCGTGGCCCGTGATCGCGTCGCTCGCGGCCGCGGGCGCGATCCTCGTGTTCGGCGTGTCGGGC
TTCGCGCTGCGCGCGCGCCGGCGGCCCGTCGTCACGGGCGCGGAGGCGATCGTCGGCAGCATCGGCGAGGTGCTCGACGA
CGGGCTCGTGCCCGATCAGCCGCCGCAGATCGGCCCGAGCGCGGACCCGGGCGCGCCGCTCGCGCCGTCCGCGGCCGGCT
GGGCGCGCGTGCACGGCGAGCGCTGGCGCGTCGCGAGCGCGACGCCGATCGCGGCCGGCCGCCGCGTGCGCGTGACGGGC
CGCAACGGCCTCACGCTCACCGTCGCACCGCTGTACGACAACGTCGTCCCCCCACGAGGAGAGCCACCATGA

Upstream 100 bases:

>100_bases
AACCGCCTACTCTTTAAGCACCGGGCGCACGCCCTTTCCACGGCCCGGCTGCGGCGCCGCACCATGCGGCCGCGCGCCGC
CGGCCGACACCGCGATGCCC

Downstream 100 bases:

>100_bases
TGGGTTTCACGTTCGGTTTCGGCAGCCTGCTGTTCGTATTCGCGCTGTTCCTCGTCGCCTCGTCGATCCGGATCTTTCGC
GAGTACGAGCGCGGTGTCGT

Product: NfeD family protein

Products: NA

Alternate protein names: Membrane-Bound Serine Protease; NfeD Protein; Nodulation Efficiency Protein D; Nodulation Competitiveness Protein NfeD; Membrane Bound Peptidase; Nodulation Protein NfeD; Transmembrane Protein; NfeD Family Protein; Membrane-Bound Serine Protease-Like Protein; Nodulation Efficiency Family Protein; Membrane-Bound Serine Protease ClpP Class; NfeD Nodulation Like Protein Membrane Protein; Nodulation Efficiency Protein Nfed; Serine Protease; Membrane-Bound Protease; NfeD-Like Family; Protease/Transporter; Membrane-Bound ClpP-Class Protease; S49 Family Serine Protease; Membrane-Bound Serine Protease NfeD-Like Protein; NfeD-Like Membrane-Bound Serine Protease; Nfed Family Protein; Nodulation Protein Nfed; Membrane-Bound Serine Protease Protein

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MPRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLA
IVQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGGR
REPAGAPGAAGAGATDTESTETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLAA
KLDGRTIVTATGAHRLDTARAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEFANPGFVLPGVAGAIGLLVGLF
ALQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGIVAFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVSG
FALRARRRPVVTGAEAIVGSIGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVTG
RNGLTLTVAPLYDNVVPPRGEPP

Sequences:

>Translated_503_residues
MPRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLA
IVQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGGR
REPAGAPGAAGAGATDTESTETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLAA
KLDGRTIVTATGAHRLDTARAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEFANPGFVLPGVAGAIGLLVGLF
ALQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGIVAFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVSG
FALRARRRPVVTGAEAIVGSIGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVTG
RNGLTLTVAPLYDNVVPPRGEPP
>Mature_502_residues
PRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAGAAAAARAPIVVIPVAGAIGPASADFVVRGLERAAREHAPLAI
VQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAASAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGGRR
EPAGAPGAAGAGATDTESTETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLAAK
LDGRTIVTATGAHRLDTARAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEFANPGFVLPGVAGAIGLLVGLFA
LQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGIVAFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVSGF
ALRARRRPVVTGAEAIVGSIGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVTGR
NGLTLTVAPLYDNVVPPRGEPP

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50623; Mature: 50492

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAGAAAAARAPIVVIPVAGAIGPA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
SADFVVRGLERAAREHAPLAIVQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAA
CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
SAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGGRREPAGAPGAAGAGATDTEST
CCCEEEEEECHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
ETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLAA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
KLDGRTIVTATGAHRLDTARAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEFA
HCCCCEEEEECCCHHHHHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
NPGFVLPGVAGAIGLLVGLFALQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGIV
CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVSGFALRARRRPVVTGAEAIVGS
HHHHHHHHEEECCCCCCCCCHHHHHHHHHHCEEEEECCCCHHHHHCCCCCCCHHHHHHHH
IGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVTG
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCEEEEEC
RNGLTLTVAPLYDNVVPPRGEPP
CCCCEEEEECHHCCCCCCCCCCC
>Mature Secondary Structure 
PRSSPRPPPARGKLPARLARAAVLIGLLLACAAAAAAGAAAAARAPIVVIPVAGAIGPA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
SADFVVRGLERAAREHAPLAIVQLDTPGGLDTSMRQIIKAIVASGVPVAAFVAPGGARAA
CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
SAGTYIVYASHVAAMAPGTNLGAASPVQLGIGGQAPAGGRREPAGAPGAAGAGATDTEST
CCCEEEEEECHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
ETRKALHDAAAYIRGLAQLRGRNAEWAERAVREAVSLPANDALAQHVVDLLANDPADLAA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
KLDGRTIVTATGAHRLDTARAPLETLEPDWRSRLLATIADPSVALVLVTLGMYGLFFEFA
HCCCCEEEEECCCHHHHHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
NPGFVLPGVAGAIGLLVGLFALQLLPISYAGLALVLLGIAFLIAETFLPTFGALGVGGIV
CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFAIGALMLIDTDVPGYGVPWPVIASLAAAGAILVFGVSGFALRARRRPVVTGAEAIVGS
HHHHHHHHEEECCCCCCCCCHHHHHHHHHHCEEEEECCCCHHHHHCCCCCCCHHHHHHHH
IGEVLDDGLVPDQPPQIGPSADPGAPLAPSAAGWARVHGERWRVASATPIAAGRRVRVTG
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCEEEEEC
RNGLTLTVAPLYDNVVPPRGEPP
CCCCEEEEECHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA