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The map label for this gene is ybbK [C]

Identifier: 126445324

GI number: 126445324

Start: 894154

End: 894927

Strand: Reverse

Name: ybbK [C]

Synonym: BURPS668_A0915

Alternate gene names: 126445324

Gene position: 894927-894154 (Counterclockwise)

Preceding gene: 126442937

Following gene: 126444377

Centisome position: 28.62

GC content: 65.37

Gene sequence:

>774_bases
ATGATGGGTTTCACGTTCGGTTTCGGCAGCCTGCTGTTCGTATTCGCGCTGTTCCTCGTCGCCTCGTCGATCCGGATCTT
TCGCGAGTACGAGCGCGGTGTCGTGTTCCTGCTCGGGCGCTTCTGGAAGGTCAAGGGGCCGGGGCTCGTGCTGATCGTGC
CCGTCATCCAGCAGGCGGTGCGCATCGACTTGCGCACCGTCGTGTTCGACGTGCCGGCGCAGGACGTGATCACGCGCGAC
AACGTATCGGTGAAGGTAAGCGCGGTCGTGTATTTTCGCGTGGTCGACCCCGAGAAGGCGGTGATCCAGGTCGCCCGCTA
TTTCGACGCGACGAGCCAGCTCGCGCAGACGACGCTGCGCGCGGTGCTCGGCAAGCACGAGCTCGACGCGCTGCTCGCCG
AGCGCGAGCAGTTGAACGCCGACATCCAGAAGACGCTCGATGCGCAAACCGATGCGTGGGGAATCAAGGTGTCGACGGTC
GAGATCAAGCACGTCGACCTGAACGAGACGATGATCCGCGCGATCGCGCGCCAGGCGGAAGCCGAGCGCGAGCGGCGCGC
GAAGGTGATTCATGCGGAGGGCGAGCTGCAGGCGTCCGAGCAGTTGCTGAAGGCCGCGCAGCGGCTCGCGCTGCAGCCGC
AGGCGATGCAGTTGCGCTATCTGCAGACGCTCACGACGATCGCCGCCGACAAGAACTCGACGATCGTGTTCCCGCTGCCG
ATCGATCTGCTCAGCTCGGTGCTCGAACGCTTCGGGCGCGCGCCGCAGCAGTGA

Upstream 100 bases:

>100_bases
TCGCGGCCGGCCGCCGCGTGCGCGTGACGGGCCGCAACGGCCTCACGCTCACCGTCGCACCGCTGTACGACAACGTCGTC
CCCCCACGAGGAGAGCCACC

Downstream 100 bases:

>100_bases
CCGGATCGGCGTTTTTCGCGCGCCGCCCCCCGCAGCGGTCCGGCGAATGGCCGGATTGCCGGATTGCCGGATTCGCCGGA
TTGCAAGCCGGCGGCGGCCC

Product: SPFH domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MMGFTFGFGSLLFVFALFLVASSIRIFREYERGVVFLLGRFWKVKGPGLVLIVPVIQQAVRIDLRTVVFDVPAQDVITRD
NVSVKVSAVVYFRVVDPEKAVIQVARYFDATSQLAQTTLRAVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTV
EIKHVDLNETMIRAIARQAEAERERRAKVIHAEGELQASEQLLKAAQRLALQPQAMQLRYLQTLTTIAADKNSTIVFPLP
IDLLSSVLERFGRAPQQ

Sequences:

>Translated_257_residues
MMGFTFGFGSLLFVFALFLVASSIRIFREYERGVVFLLGRFWKVKGPGLVLIVPVIQQAVRIDLRTVVFDVPAQDVITRD
NVSVKVSAVVYFRVVDPEKAVIQVARYFDATSQLAQTTLRAVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTV
EIKHVDLNETMIRAIARQAEAERERRAKVIHAEGELQASEQLLKAAQRLALQPQAMQLRYLQTLTTIAADKNSTIVFPLP
IDLLSSVLERFGRAPQQ
>Mature_257_residues
MMGFTFGFGSLLFVFALFLVASSIRIFREYERGVVFLLGRFWKVKGPGLVLIVPVIQQAVRIDLRTVVFDVPAQDVITRD
NVSVKVSAVVYFRVVDPEKAVIQVARYFDATSQLAQTTLRAVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTV
EIKHVDLNETMIRAIARQAEAERERRAKVIHAEGELQASEQLLKAAQRLALQPQAMQLRYLQTLTTIAADKNSTIVFPLP
IDLLSSVLERFGRAPQQ

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=250, Percent_Identity=48.8, Blast_Score=217, Evalue=9e-57,
Organism=Homo sapiens, GI221316744, Length=246, Percent_Identity=47.9674796747967, Blast_Score=204, Evalue=6e-53,
Organism=Homo sapiens, GI21686995, Length=246, Percent_Identity=47.9674796747967, Blast_Score=204, Evalue=6e-53,
Organism=Homo sapiens, GI7657615, Length=242, Percent_Identity=35.9504132231405, Blast_Score=147, Evalue=9e-36,
Organism=Homo sapiens, GI7305503, Length=162, Percent_Identity=39.5061728395062, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI20149563, Length=157, Percent_Identity=33.1210191082803, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI38016907, Length=61, Percent_Identity=63.9344262295082, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1786697, Length=199, Percent_Identity=35.678391959799, Blast_Score=128, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17569493, Length=241, Percent_Identity=47.3029045643153, Blast_Score=215, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI193209764, Length=241, Percent_Identity=47.3029045643153, Blast_Score=214, Evalue=4e-56,
Organism=Caenorhabditis elegans, GI17569497, Length=253, Percent_Identity=42.6877470355731, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI25153583, Length=243, Percent_Identity=49.3827160493827, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI71987612, Length=243, Percent_Identity=49.3827160493827, Blast_Score=202, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI71987621, Length=243, Percent_Identity=49.3827160493827, Blast_Score=201, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17570459, Length=252, Percent_Identity=42.4603174603175, Blast_Score=191, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI17569499, Length=242, Percent_Identity=45.0413223140496, Blast_Score=184, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI193210507, Length=257, Percent_Identity=42.4124513618677, Blast_Score=183, Evalue=8e-47,
Organism=Caenorhabditis elegans, GI17570161, Length=257, Percent_Identity=42.4124513618677, Blast_Score=183, Evalue=9e-47,
Organism=Caenorhabditis elegans, GI71989948, Length=242, Percent_Identity=45.4545454545455, Blast_Score=182, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=232, Percent_Identity=45.6896551724138, Blast_Score=169, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI71989955, Length=191, Percent_Identity=45.5497382198953, Blast_Score=138, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI32564147, Length=175, Percent_Identity=36, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=44.9152542372881, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17542664, Length=159, Percent_Identity=28.9308176100629, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45556022, Length=241, Percent_Identity=49.3775933609959, Blast_Score=215, Evalue=2e-56,
Organism=Drosophila melanogaster, GI18860517, Length=249, Percent_Identity=48.1927710843374, Blast_Score=212, Evalue=2e-55,
Organism=Drosophila melanogaster, GI62484448, Length=245, Percent_Identity=49.3877551020408, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI24657857, Length=249, Percent_Identity=48.5943775100402, Blast_Score=201, Evalue=3e-52,
Organism=Drosophila melanogaster, GI281365664, Length=249, Percent_Identity=48.5943775100402, Blast_Score=201, Evalue=3e-52,
Organism=Drosophila melanogaster, GI62484274, Length=245, Percent_Identity=49.3877551020408, Blast_Score=201, Evalue=3e-52,
Organism=Drosophila melanogaster, GI28573263, Length=248, Percent_Identity=39.1129032258064, Blast_Score=181, Evalue=5e-46,
Organism=Drosophila melanogaster, GI281361631, Length=239, Percent_Identity=38.0753138075314, Blast_Score=177, Evalue=7e-45,
Organism=Drosophila melanogaster, GI281361633, Length=239, Percent_Identity=38.0753138075314, Blast_Score=177, Evalue=7e-45,
Organism=Drosophila melanogaster, GI21356845, Length=239, Percent_Identity=35.9832635983264, Blast_Score=175, Evalue=2e-44,
Organism=Drosophila melanogaster, GI281361635, Length=181, Percent_Identity=39.2265193370166, Blast_Score=138, Evalue=4e-33,
Organism=Drosophila melanogaster, GI45550506, Length=165, Percent_Identity=39.3939393939394, Blast_Score=122, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28817; Mature: 28817

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGFTFGFGSLLFVFALFLVASSIRIFREYERGVVFLLGRFWKVKGPGLVLIVPVIQQAV
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHEECCCCEEEEHHHHHHHH
RIDLRTVVFDVPAQDVITRDNVSVKVSAVVYFRVVDPEKAVIQVARYFDATSQLAQTTLR
HHHHHHEEEECCHHHHEECCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
AVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTVEIKHVDLNETMIRAIARQAE
HHHCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHH
AERERRAKVIHAEGELQASEQLLKAAQRLALQPQAMQLRYLQTLTTIAADKNSTIVFPLP
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
IDLLSSVLERFGRAPQQ
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MMGFTFGFGSLLFVFALFLVASSIRIFREYERGVVFLLGRFWKVKGPGLVLIVPVIQQAV
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHEECCCCEEEEHHHHHHHH
RIDLRTVVFDVPAQDVITRDNVSVKVSAVVYFRVVDPEKAVIQVARYFDATSQLAQTTLR
HHHHHHEEEECCHHHHEECCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
AVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTVEIKHVDLNETMIRAIARQAE
HHHCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHH
AERERRAKVIHAEGELQASEQLLKAAQRLALQPQAMQLRYLQTLTTIAADKNSTIVFPLP
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
IDLLSSVLERFGRAPQQ
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]