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The map label for this gene is yfmJ [H]

Identifier: 126442635

GI number: 126442635

Start: 2544401

End: 2545669

Strand: Reverse

Name: yfmJ [H]

Synonym: BURPS668_A2648

Alternate gene names: 126442635

Gene position: 2545669-2544401 (Counterclockwise)

Preceding gene: 126443328

Following gene: 126444081

Centisome position: 81.4

GC content: 70.69

Gene sequence:

>1269_bases
TTGCATCGTTGCGGATCGCGGATCGCGGATCGCGGATCGCGGATCGCGGATCGCGGATCGCGGATCGCGGATCGCGGATC
GCGGATCGCGGATCGCGGATCGCGCCTCGCGGATCGCGCCTCGCGCCTCGCGCCTCGCGCCTCGCGCCTCGCGCCTCGCG
CCTCGCGCGAATGCGACCGCGGCGCACTCGCGGCGTTCGCCGATGCGGGCGCATGCCGTCCGTTTCCATTTCTCCCGAAG
GTGATGCCCATCATGTCCACACCCGTCAATCGACAACTGCGCCTGAAGGCGCGCCCCGACGGACGCGTCGGTCACGAGCA
CTTCACGCTCGCCGAAGCGCCGCTGCCCGCGCTCGGGCCGGGCGAGATGCTCGTGCGCGTGCTGTATCTGTCGATGGATC
CCACCAATCGCGTCTGGATGAGCGACATCCCGCAGTATCTGCCGCCGGTGGCGATCGGCGACGTGATGCGCGCGCTCGGG
ATCGGCCGCGTCGTCGCGTCGAACGCGCCGGGGTTCGCCGAGGGCGATCTCGTGCAGGGGCTCGTCGGCTGGCAGGACTA
CGCGCACGTGCGCGCCGACGAAATCGCGCAGTACACGAAGCTGCCCGCCGCGCTCGGCCTGCCGCTGCCGCGCCTGCTCG
GCGCATGCGGGATGAGCGGGCTCACCGCGTACTACGGGCTCACCGAGATCGCGCCGGTGCAGCCGGGCGAGACGCTCGTC
GTGTCGGCGGCCGCGGGCTCGGTGGGCTCCGTCGCCGGGCAGATCGGCAAGATTCACGGCGCGCGCGTCGTCGGCATCGC
GGGTGGCGCGGACAAGTGCCGCTACCTGACCGACGAACTCGGCTTCGACGCGGCCGTCGACTACAAGTCCGACGACTGGA
AGCGCGCGCTGAAGGACGCGACGCCCGACGGCGTGCACGTGAGCTTCGAGAACGTCGGCGGCGAGATCATGCGCGCGGTG
CTGTCGCGGATGGCGATCGGCGGACGCGTCGCGCTGTGCGGCGTGATCGCGAACTACAACAGCGGGCGGCCCACCGACGA
CGTCAGCGTGTTGATCGCGAAGCGGCTGACGATGCGCGGCTTCCTGATTCTCGATTACCGGAAGAGCCGCGAGGCGATCG
CGACGCTCGCCGGCTGGCTGCGCGACGGCCGGCTGAAGGCGGAGGAAACCGTCGCCGACGGGCTGACCAACGCGCCCGAC
GTGCTGAATCGCCTGTTTGACGGCAGCCATCGCGGCAAGCTCGTGCTGCGGGTCGATCCGCAAGCTTGA

Upstream 100 bases:

>100_bases
GTGATCGACGGCGGGATGTGCGCGGTCTGACGTCGCGCGTGCGTCGGCGGCGGCATTTTCGCGCGCCGCCGGCGAAACTT
GAAAAATCGCGGCGGTGTGA

Downstream 100 bases:

>100_bases
TCGGGCGGCGGCGCGCGCTTTGGCCGATGCTGCCGCTTCGGCCGCTTCGGCCGCTTCGGCTGCTTCGACCGCTTCGACTG
CTTCGACTGCTTCGACTGCC

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MHRCGSRIADRGSRIADRGSRIADRGSRIADRGSRLADRASRLAPRASRLAPRASRECDRGALAAFADAGACRPFPFLPK
VMPIMSTPVNRQLRLKARPDGRVGHEHFTLAEAPLPALGPGEMLVRVLYLSMDPTNRVWMSDIPQYLPPVAIGDVMRALG
IGRVVASNAPGFAEGDLVQGLVGWQDYAHVRADEIAQYTKLPAALGLPLPRLLGACGMSGLTAYYGLTEIAPVQPGETLV
VSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDELGFDAAVDYKSDDWKRALKDATPDGVHVSFENVGGEIMRAV
LSRMAIGGRVALCGVIANYNSGRPTDDVSVLIAKRLTMRGFLILDYRKSREAIATLAGWLRDGRLKAEETVADGLTNAPD
VLNRLFDGSHRGKLVLRVDPQA

Sequences:

>Translated_422_residues
MHRCGSRIADRGSRIADRGSRIADRGSRIADRGSRLADRASRLAPRASRLAPRASRECDRGALAAFADAGACRPFPFLPK
VMPIMSTPVNRQLRLKARPDGRVGHEHFTLAEAPLPALGPGEMLVRVLYLSMDPTNRVWMSDIPQYLPPVAIGDVMRALG
IGRVVASNAPGFAEGDLVQGLVGWQDYAHVRADEIAQYTKLPAALGLPLPRLLGACGMSGLTAYYGLTEIAPVQPGETLV
VSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDELGFDAAVDYKSDDWKRALKDATPDGVHVSFENVGGEIMRAV
LSRMAIGGRVALCGVIANYNSGRPTDDVSVLIAKRLTMRGFLILDYRKSREAIATLAGWLRDGRLKAEETVADGLTNAPD
VLNRLFDGSHRGKLVLRVDPQA
>Mature_422_residues
MHRCGSRIADRGSRIADRGSRIADRGSRIADRGSRLADRASRLAPRASRLAPRASRECDRGALAAFADAGACRPFPFLPK
VMPIMSTPVNRQLRLKARPDGRVGHEHFTLAEAPLPALGPGEMLVRVLYLSMDPTNRVWMSDIPQYLPPVAIGDVMRALG
IGRVVASNAPGFAEGDLVQGLVGWQDYAHVRADEIAQYTKLPAALGLPLPRLLGACGMSGLTAYYGLTEIAPVQPGETLV
VSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDELGFDAAVDYKSDDWKRALKDATPDGVHVSFENVGGEIMRAV
LSRMAIGGRVALCGVIANYNSGRPTDDVSVLIAKRLTMRGFLILDYRKSREAIATLAGWLRDGRLKAEETVADGLTNAPD
VLNRLFDGSHRGKLVLRVDPQA

Specific function: Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226246682, Length=348, Percent_Identity=35.9195402298851, Blast_Score=192, Evalue=4e-49,
Organism=Homo sapiens, GI226246680, Length=348, Percent_Identity=35.9195402298851, Blast_Score=192, Evalue=4e-49,
Organism=Homo sapiens, GI22748929, Length=348, Percent_Identity=35.9195402298851, Blast_Score=192, Evalue=4e-49,
Organism=Homo sapiens, GI226059159, Length=335, Percent_Identity=34.0298507462687, Blast_Score=188, Evalue=8e-48,
Organism=Homo sapiens, GI226059133, Length=335, Percent_Identity=34.0298507462687, Blast_Score=188, Evalue=8e-48,
Organism=Homo sapiens, GI226056130, Length=307, Percent_Identity=35.1791530944625, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI28557745, Length=334, Percent_Identity=27.8443113772455, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI22538446, Length=277, Percent_Identity=28.5198555956679, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI22538444, Length=277, Percent_Identity=28.5198555956679, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI226510941, Length=338, Percent_Identity=40.8284023668639, Blast_Score=248, Evalue=5e-67,
Organism=Caenorhabditis elegans, GI133901710, Length=314, Percent_Identity=35.6687898089172, Blast_Score=171, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI133901712, Length=314, Percent_Identity=35.6687898089172, Blast_Score=170, Evalue=1e-42,
Organism=Saccharomyces cerevisiae, GI6323504, Length=335, Percent_Identity=29.2537313432836, Blast_Score=130, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 45088; Mature: 45088

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRCGSRIADRGSRIADRGSRIADRGSRIADRGSRLADRASRLAPRASRLAPRASRECDR
CCCCHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHCCC
GALAAFADAGACRPFPFLPKVMPIMSTPVNRQLRLKARPDGRVGHEHFTLAEAPLPALGP
CHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCH
GEMLVRVLYLSMDPTNRVWMSDIPQYLPPVAIGDVMRALGIGRVVASNAPGFAEGDLVQG
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHH
LVGWQDYAHVRADEIAQYTKLPAALGLPLPRLLGACGMSGLTAYYGLTEIAPVQPGETLV
HHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCHHHHHHCCHHCCCCCCCCEEE
VSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDELGFDAAVDYKSDDWKRALKDA
EEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHCC
TPDGVHVSFENVGGEIMRAVLSRMAIGGRVALCGVIANYNSGRPTDDVSVLIAKRLTMRG
CCCCEEEEHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
FLILDYRKSREAIATLAGWLRDGRLKAEETVADGLTNAPDVLNRLFDGSHRGKLVLRVDP
EEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECC
QA
CC
>Mature Secondary Structure
MHRCGSRIADRGSRIADRGSRIADRGSRIADRGSRLADRASRLAPRASRLAPRASRECDR
CCCCHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHCCC
GALAAFADAGACRPFPFLPKVMPIMSTPVNRQLRLKARPDGRVGHEHFTLAEAPLPALGP
CHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCH
GEMLVRVLYLSMDPTNRVWMSDIPQYLPPVAIGDVMRALGIGRVVASNAPGFAEGDLVQG
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHH
LVGWQDYAHVRADEIAQYTKLPAALGLPLPRLLGACGMSGLTAYYGLTEIAPVQPGETLV
HHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCCCHHHHHHCCHHCCCCCCCCEEE
VSAAAGSVGSVAGQIGKIHGARVVGIAGGADKCRYLTDELGFDAAVDYKSDDWKRALKDA
EEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHCC
TPDGVHVSFENVGGEIMRAVLSRMAIGGRVALCGVIANYNSGRPTDDVSVLIAKRLTMRG
CCCCEEEEHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
FLILDYRKSREAIATLAGWLRDGRLKAEETVADGLTNAPDVLNRLFDGSHRGKLVLRVDP
EEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECC
QA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]