Click here to switch to the map view.

The map label for this gene is cirA [C]

Identifier: 126444081

GI number: 126444081

Start: 2539938

End: 2542034

Strand: Reverse

Name: cirA [C]

Synonym: BURPS668_A2644

Alternate gene names: 126444081

Gene position: 2542034-2539938 (Counterclockwise)

Preceding gene: 126442635

Following gene: 126443399

Centisome position: 81.28

GC content: 71.48

Gene sequence:

>2097_bases
ATGGATGACCACCGACGTATCGCGCCGCCTTTCGCTCGCAGGCTGCATCCCTTGTCGCTGCTGCTCGCCGCGAGCCTCGC
GCATGGCGAGACGGGCACGCCGCCCGCCGAGCGCCGATCGGACGCGCCGCCCGCGACGGCGCTCGCGCCGATCTTCGTGA
CCGCGAACCCGCTCGGCGCGTCGGCGCTGAGCTCGCCCACCGCGTCGCTGTCCGGCGACGCGCTGACGCTGCGCCGCACC
GATTCGCTCGGCGACACGCTGAACGGCCTGCCCGGCGTGTCGACGACGACCTATGGCCCGCTCGTCGGCCGTCCGATCAT
CCGCGGGATGGACGGCGATCGCATCCGCCTCCTGCAGAACGGCGTCGCCGCGTACGACGCGTCGTCGCTGTCCTACGATC
ACGCGGTGCCGCAGGATCCGCTGAGCGTCGAGCGCATCGAGATCGTGCGCGGGCCGGCGGCGTTGCTGTACGGCGGCAAC
GCGGTCGGCGGCGTCGTCAACACGATCGACAACCGGATTCCGCGCGAAGCGATCACGGGCGTCTCGGGCGCGCTCGACGC
GAGCTACGGCGGCGCGAACAACGCGCGTGCGGGCGCGGCGCTCGTCGAAGGCGGCAACGGCCGCTTCGCGTTCCATCTCG
ACGCGTTCGGCCGCGAGACCGACGCGCTGCGGATTCCGGGCCATGCGCATTCGGCGCGCCAGCGCGCGCTCGACGGCGAG
GACGCCAGCGAGCCGTACGGCAGGCTGCCGAACAGCGACGGCCGCCGTTACGGCGGCGCGGCGGGCGGCTCGTACACGTG
GGCGGACGGCTACGTCGGCGCATCGTACAGCGGCTACGAATCGAACTACGGCTCCGTCGCCGAAACCGACGCGCGGCTTC
AGATGCGGCAGGAGCGCGTCGCGCTCGCGTCGGAGGTGCGCAATCTGCGCGGGCCGTTCTCGCAGCTGAAATTCGACTTC
GGCTACACGAATTACCAGCATAAGGAAATCGAGGACGGCGTGACGGGCACGACGTTTCGCAATCACGGCTACGAGGCGCG
CGTCGAGGCGCGGCACCGCAAGCTCGGCCCGTTCGAAGGCGCGCTCGGCGTGCAGGTCGGACAGAACACGTTCTCCGCGC
TCGGCGGCGAGGCGCTCGCGCCTACCACGCGCACGACGAGCGTCGCGCTGTTCGGCCTCGAGCAGTGGCAGGCGACCGAC
GCGCTGAAGCTGTCCGCCGGCGCGCGCATCGAGCACGTGCGGCTCGATCCGAGCGCGAACGGCGACGACAAGTTCGGCTT
CGCGCGCTCGCGCGATTTCAATGCGGGCAGCGTGTCGGCGGGCGCGCTGTACCAGCTCGCGCCCGCGTGGTCGCTCGCGG
GCAACGTGTCGTACACGGAGCGCGCGCCGACCTTCTACGAGCTGTACGCGAACGGCCCGCACGGCGCGACGGGGCAGTAC
CTGATCGGCCGGCCCGATGCGCAGAAGGAGAAGGCGGTGTCGACCGATCTCGCGCTGCGCTATGCGAGCGGTCCGAACCG
CGGCAGCATCGGCGTGTTCTACAGCCGCCTGCGGAACTACCTCGCCGAATACGACACCGGACGGCTCGTCGACGACGACG
GCGTGCCCGTGGCCCCGGGCGCCGACGACGCGCTGCGCGAGGCCGTCTATCGCGGCGTGCGCGCGGAATTCTACGGCGTC
GAGCTCGAAGGCAGGTGGCGCGCGTTCGAGCGGCGCGGGCATCGCGTCGATCTCGAGCTGAGCGCCGACTACACGCACGC
GCGCAACGCGGACACGGGCGAGCCGCTGCCGCGGATCGCGCCGCTGCGCGCGACGCTCGCGGCCGATTACGGCTACGGCC
CGTTCGGTGCGCGCGCGCAGCTCACGCATGCGTGGGCGCAGCATCGCGTGCCCGAGCACGATCTCGCGACCGACGGCTAC
ACGTCGCTCGGCGTCGTGCTCACCTACAAGTTGCGCGTCGGCGCGACGAACTGGCTCGCCTATCTGCGCGGCGACAACCT
GACGAACCAGGACATCCGCTACGCGAGCTCGGTGGTGCGCAACATCGCGCCGCAGGGCGGGCGCAGCGTGAGCATCGGGA
TGCGCACGACATTCTGA

Upstream 100 bases:

>100_bases
TCCTGTGCGCTGATATTGATACGTTATATCGTTTCCTGTTCATCGCGCGATTCGGCCCGTGATTCCCGTTCACCCCGACC
ACACCACACCGATTACCGCA

Downstream 100 bases:

>100_bases
GCGCGCGCCGGGCGTCGGGGGAGGGGCCCGGCGCCCGGCTGCGCCCCCCCTTCTGTTAGGCGGCGTTCGTTTGTAAGATA
GCGGTCGCCGCGCGCGGCCC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MDDHRRIAPPFARRLHPLSLLLAASLAHGETGTPPAERRSDAPPATALAPIFVTANPLGASALSSPTASLSGDALTLRRT
DSLGDTLNGLPGVSTTTYGPLVGRPIIRGMDGDRIRLLQNGVAAYDASSLSYDHAVPQDPLSVERIEIVRGPAALLYGGN
AVGGVVNTIDNRIPREAITGVSGALDASYGGANNARAGAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGE
DASEPYGRLPNSDGRRYGGAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERVALASEVRNLRGPFSQLKFDF
GYTNYQHKEIEDGVTGTTFRNHGYEARVEARHRKLGPFEGALGVQVGQNTFSALGGEALAPTTRTTSVALFGLEQWQATD
ALKLSAGARIEHVRLDPSANGDDKFGFARSRDFNAGSVSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQY
LIGRPDAQKEKAVSTDLALRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPGADDALREAVYRGVRAEFYGV
ELEGRWRAFERRGHRVDLELSADYTHARNADTGEPLPRIAPLRATLAADYGYGPFGARAQLTHAWAQHRVPEHDLATDGY
TSLGVVLTYKLRVGATNWLAYLRGDNLTNQDIRYASSVVRNIAPQGGRSVSIGMRTTF

Sequences:

>Translated_698_residues
MDDHRRIAPPFARRLHPLSLLLAASLAHGETGTPPAERRSDAPPATALAPIFVTANPLGASALSSPTASLSGDALTLRRT
DSLGDTLNGLPGVSTTTYGPLVGRPIIRGMDGDRIRLLQNGVAAYDASSLSYDHAVPQDPLSVERIEIVRGPAALLYGGN
AVGGVVNTIDNRIPREAITGVSGALDASYGGANNARAGAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGE
DASEPYGRLPNSDGRRYGGAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERVALASEVRNLRGPFSQLKFDF
GYTNYQHKEIEDGVTGTTFRNHGYEARVEARHRKLGPFEGALGVQVGQNTFSALGGEALAPTTRTTSVALFGLEQWQATD
ALKLSAGARIEHVRLDPSANGDDKFGFARSRDFNAGSVSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQY
LIGRPDAQKEKAVSTDLALRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPGADDALREAVYRGVRAEFYGV
ELEGRWRAFERRGHRVDLELSADYTHARNADTGEPLPRIAPLRATLAADYGYGPFGARAQLTHAWAQHRVPEHDLATDGY
TSLGVVLTYKLRVGATNWLAYLRGDNLTNQDIRYASSVVRNIAPQGGRSVSIGMRTTF
>Mature_698_residues
MDDHRRIAPPFARRLHPLSLLLAASLAHGETGTPPAERRSDAPPATALAPIFVTANPLGASALSSPTASLSGDALTLRRT
DSLGDTLNGLPGVSTTTYGPLVGRPIIRGMDGDRIRLLQNGVAAYDASSLSYDHAVPQDPLSVERIEIVRGPAALLYGGN
AVGGVVNTIDNRIPREAITGVSGALDASYGGANNARAGAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGE
DASEPYGRLPNSDGRRYGGAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERVALASEVRNLRGPFSQLKFDF
GYTNYQHKEIEDGVTGTTFRNHGYEARVEARHRKLGPFEGALGVQVGQNTFSALGGEALAPTTRTTSVALFGLEQWQATD
ALKLSAGARIEHVRLDPSANGDDKFGFARSRDFNAGSVSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQY
LIGRPDAQKEKAVSTDLALRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPGADDALREAVYRGVRAEFYGV
ELEGRWRAFERRGHRVDLELSADYTHARNADTGEPLPRIAPLRATLAADYGYGPFGARAQLTHAWAQHRVPEHDLATDGY
TSLGVVLTYKLRVGATNWLAYLRGDNLTNQDIRYASSVVRNIAPQGGRSVSIGMRTTF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 74773; Mature: 74773

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDHRRIAPPFARRLHPLSLLLAASLAHGETGTPPAERRSDAPPATALAPIFVTANPLGA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHEEEEEEECCCCCC
SALSSPTASLSGDALTLRRTDSLGDTLNGLPGVSTTTYGPLVGRPIIRGMDGDRIRLLQN
HHHCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCHHCCHHHCCCCCCEEEEECC
GVAAYDASSLSYDHAVPQDPLSVERIEIVRGPAALLYGGNAVGGVVNTIDNRIPREAITG
CCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHCCHHHHHC
VSGALDASYGGANNARAGAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGE
CCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCEEECCCCHHHHHHHCCCCC
DASEPYGRLPNSDGRRYGGAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERV
CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ALASEVRNLRGPFSQLKFDFGYTNYQHKEIEDGVTGTTFRNHGYEARVEARHRKLGPFEG
HHHHHHHHHCCCHHHEEEECCCCCCCCHHHHCCCCCCEECCCCCEEEHHHHHHCCCCCCC
ALGVQVGQNTFSALGGEALAPTTRTTSVALFGLEQWQATDALKLSAGARIEHVRLDPSAN
CCEEEECCHHHHHCCCCCCCCCCCCCEEEEEECHHHCCCCCEEECCCCEEEEEEECCCCC
GDDKFGFARSRDFNAGSVSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQY
CCCCCCCCCCCCCCCCCCCCCHHEEECCCHHHCCCCCCCCCCCEEEEEEECCCCCCCCCE
LIGRPDAQKEKAVSTDLALRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPG
EEECCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC
ADDALREAVYRGVRAEFYGVELEGRWRAFERRGHRVDLELSADYTHARNADTGEPLPRIA
CCHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCC
PLRATLAADYGYGPFGARAQLTHAWAQHRVPEHDLATDGYTSLGVVLTYKLRVGATNWLA
CHHHHEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEE
YLRGDNLTNQDIRYASSVVRNIAPQGGRSVSIGMRTTF
EEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MDDHRRIAPPFARRLHPLSLLLAASLAHGETGTPPAERRSDAPPATALAPIFVTANPLGA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHEEEEEEECCCCCC
SALSSPTASLSGDALTLRRTDSLGDTLNGLPGVSTTTYGPLVGRPIIRGMDGDRIRLLQN
HHHCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCHHCCHHHCCCCCCEEEEECC
GVAAYDASSLSYDHAVPQDPLSVERIEIVRGPAALLYGGNAVGGVVNTIDNRIPREAITG
CCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHCCHHHHHC
VSGALDASYGGANNARAGAALVEGGNGRFAFHLDAFGRETDALRIPGHAHSARQRALDGE
CCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCEEECCCCHHHHHHHCCCCC
DASEPYGRLPNSDGRRYGGAAGGSYTWADGYVGASYSGYESNYGSVAETDARLQMRQERV
CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ALASEVRNLRGPFSQLKFDFGYTNYQHKEIEDGVTGTTFRNHGYEARVEARHRKLGPFEG
HHHHHHHHHCCCHHHEEEECCCCCCCCHHHHCCCCCCEECCCCCEEEHHHHHHCCCCCCC
ALGVQVGQNTFSALGGEALAPTTRTTSVALFGLEQWQATDALKLSAGARIEHVRLDPSAN
CCEEEECCHHHHHCCCCCCCCCCCCCEEEEEECHHHCCCCCEEECCCCEEEEEEECCCCC
GDDKFGFARSRDFNAGSVSAGALYQLAPAWSLAGNVSYTERAPTFYELYANGPHGATGQY
CCCCCCCCCCCCCCCCCCCCCHHEEECCCHHHCCCCCCCCCCCEEEEEEECCCCCCCCCE
LIGRPDAQKEKAVSTDLALRYASGPNRGSIGVFYSRLRNYLAEYDTGRLVDDDGVPVAPG
EEECCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC
ADDALREAVYRGVRAEFYGVELEGRWRAFERRGHRVDLELSADYTHARNADTGEPLPRIA
CCHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCC
PLRATLAADYGYGPFGARAQLTHAWAQHRVPEHDLATDGYTSLGVVLTYKLRVGATNWLA
CHHHHEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEE
YLRGDNLTNQDIRYASSVVRNIAPQGGRSVSIGMRTTF
EEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]