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The map label for this gene is rbn [C]

Identifier: 126209408

GI number: 126209408

Start: 2180219

End: 2181049

Strand: Reverse

Name: rbn [C]

Synonym: APL_1950

Alternate gene names: 126209408

Gene position: 2181049-2180219 (Counterclockwise)

Preceding gene: 126209409

Following gene: 126209407

Centisome position: 95.89

GC content: 38.63

Gene sequence:

>831_bases
ATGTCTTTGTCACAACCGCTTTTTATTAAACTGCTTCTGAAACACTGGAAAATTCACAATATTCCGGTTTCTGCAGGTTA
TTTAACTTACAGCACAACATTAGCGATTGTACCGTTGGTTATGGTGGTATTTTCTATTTTTACCGCTTTTCCTATCTTTC
AGGAAGCAACCGAGCAACTGAAAACGCTGATTTACGATAACTTTGCCCCAAATGCCGGCGATATGGTGGAAGAATATATT
GATCTGTTTGTAGCAAACTCAAAAAAAATGGGGATTGTCAGTACTATCGGTTTGGTCGTGGTCGCTCTAATGCTGATTCA
AAGCATTGATGAAACGCTTAATAAAATGTGGCGTAACCACCGTAAGCGGTCAATTTTTATCTCTTTTTTGCTGTATGCCG
TCATTTTATTCATTGCGCCTTTACTTGCAGGCGGTAGTATTGCGATTAGTTCGTATATCTTTTCAATGGCGATTTTTAAT
GAAAACGGTTTGCTATCCTTTAGCCAGCAGCTATTACAATACACGCCGTTTTTGTTAATTTGGTTATTATTCACCACCGT
TTATTGGCTGGTGCCGAATACTAAAGTGAATATTCTACATGCTATGCTCGGTGCGATTGTTGCCGCAATCTTTTTTACCT
TAGGTAAGCAAGCCTTCGTTTGGTACATTAGCACCTTTCCGTCTTATCAAGCGATTTACGGCGCATTAGCGGTATTACCG
ATTATGCTGTTATGGATTCATTTGAGCTGGCAAGTAGTACTGTTCGGCGGACTAATTACCTCTACTCTAAATGTATATAA
TGAAATGAAAAAAGGAAAACTCAATTTATGA

Upstream 100 bases:

>100_bases
TCCACGCACGAGGTCCAATGGGCTTAGAGGCGCTCACCACCTATAAATGGGTCTGTGAAGGGGATTATTTGGTGAGAAAA
TAAGTCAATGAAGGAAAATA

Downstream 100 bases:

>100_bases
TCGGCTTAATCCAACGTGTAAAATGGGCAAAAGTGGAAGTGGAAGGCCAAACGGTCGGTGAAATCACACAAGGTTTATTG
GTATTACTCGGTGTAGAACA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MSLSQPLFIKLLLKHWKIHNIPVSAGYLTYSTTLAIVPLVMVVFSIFTAFPIFQEATEQLKTLIYDNFAPNAGDMVEEYI
DLFVANSKKMGIVSTIGLVVVALMLIQSIDETLNKMWRNHRKRSIFISFLLYAVILFIAPLLAGGSIAISSYIFSMAIFN
ENGLLSFSQQLLQYTPFLLIWLLFTTVYWLVPNTKVNILHAMLGAIVAAIFFTLGKQAFVWYISTFPSYQAIYGALAVLP
IMLLWIHLSWQVVLFGGLITSTLNVYNEMKKGKLNL

Sequences:

>Translated_276_residues
MSLSQPLFIKLLLKHWKIHNIPVSAGYLTYSTTLAIVPLVMVVFSIFTAFPIFQEATEQLKTLIYDNFAPNAGDMVEEYI
DLFVANSKKMGIVSTIGLVVVALMLIQSIDETLNKMWRNHRKRSIFISFLLYAVILFIAPLLAGGSIAISSYIFSMAIFN
ENGLLSFSQQLLQYTPFLLIWLLFTTVYWLVPNTKVNILHAMLGAIVAAIFFTLGKQAFVWYISTFPSYQAIYGALAVLP
IMLLWIHLSWQVVLFGGLITSTLNVYNEMKKGKLNL
>Mature_275_residues
SLSQPLFIKLLLKHWKIHNIPVSAGYLTYSTTLAIVPLVMVVFSIFTAFPIFQEATEQLKTLIYDNFAPNAGDMVEEYID
LFVANSKKMGIVSTIGLVVVALMLIQSIDETLNKMWRNHRKRSIFISFLLYAVILFIAPLLAGGSIAISSYIFSMAIFNE
NGLLSFSQQLLQYTPFLLIWLLFTTVYWLVPNTKVNILHAMLGAIVAAIFFTLGKQAFVWYISTFPSYQAIYGALAVLPI
MLLWIHLSWQVVLFGGLITSTLNVYNEMKKGKLNL

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=271, Percent_Identity=44.280442804428, Blast_Score=223, Evalue=9e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1950_ACTP2 (A3N3P2)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054633.1
- STRING:   A3N3P2
- GeneID:   4848579
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1950
- HOGENOM:   HBG451793
- OMA:   ELAQIQV
- PhylomeDB:   A3N3P2
- ProtClustDB:   PRK01637
- BioCyc:   APLE416269:APL_1950-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 31166; Mature: 31035

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1b596844)-; HASH(0x1ed45bb0)-; HASH(0x1d135c64)-; HASH(0x1f3de83c)-; HASH(0x1ee3e0b0)-; HASH(0x1e902390)-; HASH(0x1e6951ac)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSQPLFIKLLLKHWKIHNIPVSAGYLTYSTTLAIVPLVMVVFSIFTAFPIFQEATEQL
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTLIYDNFAPNAGDMVEEYIDLFVANSKKMGIVSTIGLVVVALMLIQSIDETLNKMWRNH
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKRSIFISFLLYAVILFIAPLLAGGSIAISSYIFSMAIFNENGLLSFSQQLLQYTPFLLI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
WLLFTTVYWLVPNTKVNILHAMLGAIVAAIFFTLGKQAFVWYISTFPSYQAIYGALAVLP
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
IMLLWIHLSWQVVLFGGLITSTLNVYNEMKKGKLNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure 
SLSQPLFIKLLLKHWKIHNIPVSAGYLTYSTTLAIVPLVMVVFSIFTAFPIFQEATEQL
CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTLIYDNFAPNAGDMVEEYIDLFVANSKKMGIVSTIGLVVVALMLIQSIDETLNKMWRNH
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKRSIFISFLLYAVILFIAPLLAGGSIAISSYIFSMAIFNENGLLSFSQQLLQYTPFLLI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
WLLFTTVYWLVPNTKVNILHAMLGAIVAAIFFTLGKQAFVWYISTFPSYQAIYGALAVLP
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
IMLLWIHLSWQVVLFGGLITSTLNVYNEMKKGKLNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA