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The map label for this gene is asnC [H]

Identifier: 126209300

GI number: 126209300

Start: 2062188

End: 2062649

Strand: Direct

Name: asnC [H]

Synonym: APL_1838

Alternate gene names: 126209300

Gene position: 2062188-2062649 (Clockwise)

Preceding gene: 126209298

Following gene: 126209301

Centisome position: 90.67

GC content: 38.74

Gene sequence:

>462_bases
TTGCACACAAAATATCAAATTGACCGGTTAGATCAGCTTATTTTACGTGCATTGGTAGAAGATGCTCGTACGCCTTATGC
GGAAATGGCGAAGAATTTCGGTGTAAGTGCGGGAACCATTCATGTTCGAGTGGAAAAAATGCGTCAATCGGGAATTATCG
AAGGGACTAAAATCCGTATTAATGAGCGTAAACTCGGCTATGACGTTTGTTGCTTTATCGGCATTATTTTGAAATCGGCG
AAAGATTACGAAAAAGTGATTGCCAAATTGAATGAGTTTGAAGAAGTGGTCGAGGCTTACTATACCACGGGAAATTATTC
GATTTTTATTAAGGTAATGACACATACGATTGAGGAATTACATCGTGTATTGGCGACAAAAATTCAGCTGATTGATGAAA
TTCAATCTACCGAAACCTTAATTTCGATGCAAAACCCGATTTTAAGAGGGATCAAGCCTTAG

Upstream 100 bases:

>100_bases
CAATATTCATCAAATAAAAATCTTTTTCTATTGGATTTTATCTAATTTTTTGTGTTAAATTTTATGTAATCATTAATAAA
TCGAAAATGGAGTATGAATT

Downstream 100 bases:

>100_bases
CCTAGCGTCGATATTGTAAAAAATAACGGAAATTTGACCGTTTGTGAGCAAAAAACGCAAACGTTTTCATTTGATCCGCT
TCACAAATTTGCAAATTTTT

Product: DNA-binding transcriptional regulator AsnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MHTKYQIDRLDQLILRALVEDARTPYAEMAKNFGVSAGTIHVRVEKMRQSGIIEGTKIRINERKLGYDVCCFIGIILKSA
KDYEKVIAKLNEFEEVVEAYYTTGNYSIFIKVMTHTIEELHRVLATKIQLIDEIQSTETLISMQNPILRGIKP

Sequences:

>Translated_153_residues
MHTKYQIDRLDQLILRALVEDARTPYAEMAKNFGVSAGTIHVRVEKMRQSGIIEGTKIRINERKLGYDVCCFIGIILKSA
KDYEKVIAKLNEFEEVVEAYYTTGNYSIFIKVMTHTIEELHRVLATKIQLIDEIQSTETLISMQNPILRGIKP
>Mature_153_residues
MHTKYQIDRLDQLILRALVEDARTPYAEMAKNFGVSAGTIHVRVEKMRQSGIIEGTKIRINERKLGYDVCCFIGIILKSA
KDYEKVIAKLNEFEEVVEAYYTTGNYSIFIKVMTHTIEELHRVLATKIQLIDEIQSTETLISMQNPILRGIKP

Specific function: Activator of asnA transcription [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=150, Percent_Identity=67.3333333333333, Blast_Score=207, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17576; Mature: 17576

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTKYQIDRLDQLILRALVEDARTPYAEMAKNFGVSAGTIHVRVEKMRQSGIIEGTKIRI
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEHHHHHHHHCCCCCCCEEEE
NERKLGYDVCCFIGIILKSAKDYEKVIAKLNEFEEVVEAYYTTGNYSIFIKVMTHTIEEL
ECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
HRVLATKIQLIDEIQSTETLISMQNPILRGIKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHTKYQIDRLDQLILRALVEDARTPYAEMAKNFGVSAGTIHVRVEKMRQSGIIEGTKIRI
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEHHHHHHHHCCCCCCCEEEE
NERKLGYDVCCFIGIILKSAKDYEKVIAKLNEFEEVVEAYYTTGNYSIFIKVMTHTIEEL
ECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
HRVLATKIQLIDEIQSTETLISMQNPILRGIKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]