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The map label for this gene is 126209293

Identifier: 126209293

GI number: 126209293

Start: 2054650

End: 2055231

Strand: Reverse

Name: 126209293

Synonym: APL_1831

Alternate gene names: NA

Gene position: 2055231-2054650 (Counterclockwise)

Preceding gene: 126209296

Following gene: 126209291

Centisome position: 90.36

GC content: 37.11

Gene sequence:

>582_bases
ATGTCAGAGATTGAACAATTAAGCTCCATTACACCGCAACGAATCGAAGAAATTCGTTTACAAATGGTTAAATTCGCTAC
GCTACAATTAAAAGATCCCGATTTAGCCGAAGACGTCGTTCAAGAATCGCTTGCCAGTGCCTATAAAAATGCCCACTCTT
TCCGAGGACAAGCGGCATTAAAAACTTGGATTTTTGCTATTTTAAAAAACAAAATTATCGATTTAATTAAATATCGAAAA
CGAACGGTTAATGTTTCGGACTTAATTGAAGAAGAAAGTCCCAATCAATTTTTCGATCACACCAGATATTGGTCGTCCGA
TACTTATGAACCTAAAGAATGGGAAGATGTCGGGCAAATTACTTATAAGAAAGAATTTTGGGCGATCTTCGACATTTGTT
TAAATAAACTACCCGCACAACAGGCACGTGTTTTTATGATGCGCGAACATTTAGATATGGGAAGCGAACAAATTTGCTTG
GAATGTGATATTAGCACCGCTAATTTACACGTTATTTTGCATAGAGCTAGGCTACGGCTACAGGCTTGTTTAGCCAAACA
TTGGTTTGAAGGAGAAAAATAA

Upstream 100 bases:

>100_bases
AAATCTGTTCATAATCATCTCCTTTAATGTATAATCCTTTGACTTAGAAATATAAAAATAATTACATAAAAATAAATTTA
TTTAAGATAAAGGAAAAATA

Downstream 100 bases:

>100_bases
TAATGAATTGTGAGCATGCCTCAGAATTAATTTCACTTAGCTGCGAACAAAAACTGAAAGTTAAAGAAAGTGTCCGGCTT
CAAGTGCATTTATGGCTTTG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSEIEQLSSITPQRIEEIRLQMVKFATLQLKDPDLAEDVVQESLASAYKNAHSFRGQAALKTWIFAILKNKIIDLIKYRK
RTVNVSDLIEEESPNQFFDHTRYWSSDTYEPKEWEDVGQITYKKEFWAIFDICLNKLPAQQARVFMMREHLDMGSEQICL
ECDISTANLHVILHRARLRLQACLAKHWFEGEK

Sequences:

>Translated_193_residues
MSEIEQLSSITPQRIEEIRLQMVKFATLQLKDPDLAEDVVQESLASAYKNAHSFRGQAALKTWIFAILKNKIIDLIKYRK
RTVNVSDLIEEESPNQFFDHTRYWSSDTYEPKEWEDVGQITYKKEFWAIFDICLNKLPAQQARVFMMREHLDMGSEQICL
ECDISTANLHVILHRARLRLQACLAKHWFEGEK
>Mature_192_residues
SEIEQLSSITPQRIEEIRLQMVKFATLQLKDPDLAEDVVQESLASAYKNAHSFRGQAALKTWIFAILKNKIIDLIKYRKR
TVNVSDLIEEESPNQFFDHTRYWSSDTYEPKEWEDVGQITYKKEFWAIFDICLNKLPAQQARVFMMREHLDMGSEQICLE
CDISTANLHVILHRARLRLQACLAKHWFEGEK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22693; Mature: 22562

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIEQLSSITPQRIEEIRLQMVKFATLQLKDPDLAEDVVQESLASAYKNAHSFRGQAAL
CCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH
KTWIFAILKNKIIDLIKYRKRTVNVSDLIEEESPNQFFDHTRYWSSDTYEPKEWEDVGQI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHH
TYKKEFWAIFDICLNKLPAQQARVFMMREHLDMGSEQICLECDISTANLHVILHRARLRL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QACLAKHWFEGEK
HHHHHHHHCCCCC
>Mature Secondary Structure 
SEIEQLSSITPQRIEEIRLQMVKFATLQLKDPDLAEDVVQESLASAYKNAHSFRGQAAL
CHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH
KTWIFAILKNKIIDLIKYRKRTVNVSDLIEEESPNQFFDHTRYWSSDTYEPKEWEDVGQI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHH
TYKKEFWAIFDICLNKLPAQQARVFMMREHLDMGSEQICLECDISTANLHVILHRARLRL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QACLAKHWFEGEK
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]