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The map label for this gene is rpoZ [H]

Identifier: 126209288

GI number: 126209288

Start: 2049150

End: 2049425

Strand: Reverse

Name: rpoZ [H]

Synonym: APL_1826

Alternate gene names: 126209288

Gene position: 2049425-2049150 (Counterclockwise)

Preceding gene: 126209289

Following gene: 126209287

Centisome position: 90.11

GC content: 44.57

Gene sequence:

>276_bases
ATGGCTCGTGTAACCGTACAAGAAGCAGCAGATAAAATCGGCAACCGTTTCGACTTAATTTTAACCGCAGCACGCCGCGC
AAGACAATTACAACTTCACGCTCGTGAACCGCTTGTGCCTGAAGAAAACGATAAACCGACGGTTATCGCATTACGTGAAA
TCGAAAAAGGTTTAATCAACGGTCAGATCATGGATCAATTGGAAAATAACGACGCTATCCAACAAGAAGTTGCCGAACAA
GAAGCGATCTCTTTCCTAGCAGACGTACAAGGCTAA

Upstream 100 bases:

>100_bases
TTTTGCAAATTAAACCGCTTGCATTGTAAGCAGATACGAATTTCTGTATAATCTCTCGTCTTTTTATAAACGAAATTCGC
AAAAACTCTGGAGTAACAAA

Downstream 100 bases:

>100_bases
CGCTTAAGATCAATTTTATTCAAAATTTAGATGGATAATTGAAAATAAATAGTAGTACTATCTATTGGCAATTATCCATT
TTTAATTATATCGAGGTGTA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MARVTVQEAADKIGNRFDLILTAARRARQLQLHAREPLVPEENDKPTVIALREIEKGLINGQIMDQLENNDAIQQEVAEQ
EAISFLADVQG

Sequences:

>Translated_91_residues
MARVTVQEAADKIGNRFDLILTAARRARQLQLHAREPLVPEENDKPTVIALREIEKGLINGQIMDQLENNDAIQQEVAEQ
EAISFLADVQG
>Mature_90_residues
ARVTVQEAADKIGNRFDLILTAARRARQLQLHAREPLVPEENDKPTVIALREIEKGLINGQIMDQLENNDAIQQEVAEQE
AISFLADVQG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=76.9230769230769, Blast_Score=105, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 10177; Mature: 10045

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVQEAADKIGNRFDLILTAARRARQLQLHAREPLVPEENDKPTVIALREIEKGLIN
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHCC
GQIMDQLENNDAIQQEVAEQEAISFLADVQG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARVTVQEAADKIGNRFDLILTAARRARQLQLHAREPLVPEENDKPTVIALREIEKGLIN
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHCC
GQIMDQLENNDAIQQEVAEQEAISFLADVQG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA