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The map label for this gene is hcsB [H]

Identifier: 126209160

GI number: 126209160

Start: 1927399

End: 1928715

Strand: Direct

Name: hcsB [H]

Synonym: APL_1696

Alternate gene names: 126209160

Gene position: 1927399-1928715 (Clockwise)

Preceding gene: 126209159

Following gene: 126209165

Centisome position: 84.74

GC content: 37.66

Gene sequence:

>1317_bases
ATGATTAGTCATTATTTGGATGATTTGATTGAAAATTCGGATCGAATCCTGTTATTACAAGGTCCGATAGGCTCTTTTTT
TACCGATCTGTCGGAATGGTTACGTACTCAAAATAAAACGGTATTTAAAATCAATTTAAATGCCGGTGATGAATATTTTT
ACCCGAATAGCGTTTTAAATACGTTTGCTTATCGCGATAGCCTAGAAAACTTTCATCATTATCTAGTGAGTTTTTGTCAA
ACTCATCATATTGATCAGGTGATTTGTTTCGGCGATAACCGTAAGTACCATAAAATTGCAAAAAAAGTATGTCAATCTTT
ATCCGTTGGTTTCTGGGCGTTTGAAGAGGGATATTTCCGTCCTAATTACGTTACTTTTGAAAAAAGCGGGGTAAACGCCT
ATTCGCCGATTCCATGTGATGCAACGTATTTCTCTCAATTTGAGAACTTACCCGAGCCGGCAAAACCGCAGCATGTCGCA
AAAGGCTTTTGTCCGATGGCGAAATTGGCGATTCAATATTACGTTTCCGCTTATTATCGTCGTCACCATTATTCTAAATA
TCGCCATCATCGTTTATTAAATGTCTTATATTATGTGAAATTATGGTCGATATCCGGAGTGAAACGTTTACACTATTATC
TATATGATTGGAATTTTGCAAAACGAGTAGAAAAAGGGGAATTCGGCGATTTCTTTATTTTGCCTTTACAGGTTTATGAC
GATAGCCAAATTCTGGTTCACAGCGATTATTCGAGCGTAGAGGCGATTTTACGCGAAGTGTTATTATCTTTTGCGACGAA
AGCACCTAAGCACCTACGTTTGATCGTAAAACATCACCCGATGGACCGCGGCTTTATTGATTACGGTAAAGTGATTGACG
AATATCTGGAGCAATATCCCGAACTGAAAAAACGAATTTACTATATTCACGATGTACCGATGCCGGTTTTCTTACGTCAC
GGTAAAGGAATGGTCACGCTAAACAGTACCAGCGGTATTTCGGCGTTATTACACAATATGCCGGTGAAAACCTTAGGTCG
TGCCAATTATGATTTTGCCGGATTAACCTATCAAGGTAGCTTAGACGACTTTTGGAGCAATTCGGAAAAACCGGATGACG
GATTATTTAATGCCTACCGAAAATTCCATCTACATAAAACGCATATTAACGGTAGCTTCTATAACAAAGTGATTTTGCGT
TATCCGTATAATCAAAGCTACACCTTAACACAACAACCGGTTATTTTTTGTAAAATCTTCACAAAAAATAACCGCTTTTC
TAATCTATTCTCTAAAAGATCACTTCTAAACGCATAA

Upstream 100 bases:

>100_bases
TCACATAGTGGTATTAAACGTCCGTGGATCGCCAAACAGTTTGGTAAATTGAAACAGCTTTATCGCACATTGCAATAAGA
ATTTTTAAAGAGTATTACTT

Downstream 100 bases:

>100_bases
AGGTATTGATGAAGTGGTTACGATCTTTGTCTTATCGTTATAGAAGCTGATTTCCGGTTGAATAAACACCCAATTACGGA
AAATCGGTTGGCGATAGCTG

Product: capsule polysaccharide modification protein HcsB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MISHYLDDLIENSDRILLLQGPIGSFFTDLSEWLRTQNKTVFKINLNAGDEYFYPNSVLNTFAYRDSLENFHHYLVSFCQ
THHIDQVICFGDNRKYHKIAKKVCQSLSVGFWAFEEGYFRPNYVTFEKSGVNAYSPIPCDATYFSQFENLPEPAKPQHVA
KGFCPMAKLAIQYYVSAYYRRHHYSKYRHHRLLNVLYYVKLWSISGVKRLHYYLYDWNFAKRVEKGEFGDFFILPLQVYD
DSQILVHSDYSSVEAILREVLLSFATKAPKHLRLIVKHHPMDRGFIDYGKVIDEYLEQYPELKKRIYYIHDVPMPVFLRH
GKGMVTLNSTSGISALLHNMPVKTLGRANYDFAGLTYQGSLDDFWSNSEKPDDGLFNAYRKFHLHKTHINGSFYNKVILR
YPYNQSYTLTQQPVIFCKIFTKNNRFSNLFSKRSLLNA

Sequences:

>Translated_438_residues
MISHYLDDLIENSDRILLLQGPIGSFFTDLSEWLRTQNKTVFKINLNAGDEYFYPNSVLNTFAYRDSLENFHHYLVSFCQ
THHIDQVICFGDNRKYHKIAKKVCQSLSVGFWAFEEGYFRPNYVTFEKSGVNAYSPIPCDATYFSQFENLPEPAKPQHVA
KGFCPMAKLAIQYYVSAYYRRHHYSKYRHHRLLNVLYYVKLWSISGVKRLHYYLYDWNFAKRVEKGEFGDFFILPLQVYD
DSQILVHSDYSSVEAILREVLLSFATKAPKHLRLIVKHHPMDRGFIDYGKVIDEYLEQYPELKKRIYYIHDVPMPVFLRH
GKGMVTLNSTSGISALLHNMPVKTLGRANYDFAGLTYQGSLDDFWSNSEKPDDGLFNAYRKFHLHKTHINGSFYNKVILR
YPYNQSYTLTQQPVIFCKIFTKNNRFSNLFSKRSLLNA
>Mature_438_residues
MISHYLDDLIENSDRILLLQGPIGSFFTDLSEWLRTQNKTVFKINLNAGDEYFYPNSVLNTFAYRDSLENFHHYLVSFCQ
THHIDQVICFGDNRKYHKIAKKVCQSLSVGFWAFEEGYFRPNYVTFEKSGVNAYSPIPCDATYFSQFENLPEPAKPQHVA
KGFCPMAKLAIQYYVSAYYRRHHYSKYRHHRLLNVLYYVKLWSISGVKRLHYYLYDWNFAKRVEKGEFGDFFILPLQVYD
DSQILVHSDYSSVEAILREVLLSFATKAPKHLRLIVKHHPMDRGFIDYGKVIDEYLEQYPELKKRIYYIHDVPMPVFLRH
GKGMVTLNSTSGISALLHNMPVKTLGRANYDFAGLTYQGSLDDFWSNSEKPDDGLFNAYRKFHLHKTHINGSFYNKVILR
YPYNQSYTLTQQPVIFCKIFTKNNRFSNLFSKRSLLNA

Specific function: Involved in the phospholipid modification of the capsular polysaccharide, a strong requirement for its translocation to the cell surface [H]

COG id: COG3562

COG function: function code M; Capsule polysaccharide export protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007833 [H]

Pfam domain/function: PF05159 Capsule_synth [H]

EC number: NA

Molecular weight: Translated: 51529; Mature: 51529

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISHYLDDLIENSDRILLLQGPIGSFFTDLSEWLRTQNKTVFKINLNAGDEYFYPNSVLN
CCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH
TFAYRDSLENFHHYLVSFCQTHHIDQVICFGDNRKYHKIAKKVCQSLSVGFWAFEEGYFR
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCC
PNYVTFEKSGVNAYSPIPCDATYFSQFENLPEPAKPQHVAKGFCPMAKLAIQYYVSAYYR
CCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHH
RHHYSKYRHHRLLNVLYYVKLWSISGVKRLHYYLYDWNFAKRVEKGEFGDFFILPLQVYD
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHCCCCCCCCEEEEEEEEEC
DSQILVHSDYSSVEAILREVLLSFATKAPKHLRLIVKHHPMDRGFIDYGKVIDEYLEQYP
CCEEEEECCHHHHHHHHHHHHHHHHHCCCHHEEEEEHCCCCCCCCHHHHHHHHHHHHHHH
ELKKRIYYIHDVPMPVFLRHGKGMVTLNSTSGISALLHNMPVKTLGRANYDFAGLTYQGS
HHHHHEEEEECCCHHHEEECCCCEEEEECCCHHHHHHHCCCHHHHCCCCCCEECEEEECC
LDDFWSNSEKPDDGLFNAYRKFHLHKTHINGSFYNKVILRYPYNQSYTLTQQPVIFCKIF
CHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCEECEEEEECCCCCCEEEECCCEEEEEEE
TKNNRFSNLFSKRSLLNA
ECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MISHYLDDLIENSDRILLLQGPIGSFFTDLSEWLRTQNKTVFKINLNAGDEYFYPNSVLN
CCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH
TFAYRDSLENFHHYLVSFCQTHHIDQVICFGDNRKYHKIAKKVCQSLSVGFWAFEEGYFR
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCC
PNYVTFEKSGVNAYSPIPCDATYFSQFENLPEPAKPQHVAKGFCPMAKLAIQYYVSAYYR
CCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHH
RHHYSKYRHHRLLNVLYYVKLWSISGVKRLHYYLYDWNFAKRVEKGEFGDFFILPLQVYD
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHCCCCCCCCEEEEEEEEEC
DSQILVHSDYSSVEAILREVLLSFATKAPKHLRLIVKHHPMDRGFIDYGKVIDEYLEQYP
CCEEEEECCHHHHHHHHHHHHHHHHHCCCHHEEEEEHCCCCCCCCHHHHHHHHHHHHHHH
ELKKRIYYIHDVPMPVFLRHGKGMVTLNSTSGISALLHNMPVKTLGRANYDFAGLTYQGS
HHHHHEEEEECCCHHHEEECCCCEEEEECCCHHHHHHHCCCHHHHCCCCCCEECEEEECC
LDDFWSNSEKPDDGLFNAYRKFHLHKTHINGSFYNKVILRYPYNQSYTLTQQPVIFCKIF
CHHHHCCCCCCCCHHHHHHHHHEEEEEECCCCEECEEEEECCCCCCEEEECCCEEEEEEE
TKNNRFSNLFSKRSLLNA
ECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]