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The map label for this gene is ynfI [C]

Identifier: 126209141

GI number: 126209141

Start: 1904027

End: 1904632

Strand: Direct

Name: ynfI [C]

Synonym: APL_1677

Alternate gene names: 126209141

Gene position: 1904027-1904632 (Clockwise)

Preceding gene: 126209140

Following gene: 126209142

Centisome position: 83.71

GC content: 37.79

Gene sequence:

>606_bases
ATGCAAAACGAATTACAACAATGGATTTCTATCAGCGGAAGATTATTAGGCTCGTTATTCTACTACGAGCCCAATAATGA
GAATGTACAGTCGGCTTTGCATTTTTTCCAACAAGAAAATTGGGCAAATGAATGGGGGGAATTAGCCAATGAATCCCAAA
TTAAGCAGTTAATTGCCCAAGGTTTAACACAAGATTTGTCCGAACAATATCAGCATCTTTTTATTGGACCGGAACAATTG
ATCGCACCGCCATGGAGTTCAGTCTATCTTGATCCCGAATCAGTTATTTTTGGTAATTCGTTATTAGATTTACGTGATTT
TTTACGCAAGCACCAAATTGCGTTAACTCAGAACGAAACTGAGCCGGAAGATCATATTGGCTTAATGTTATTACTTGCCG
CTTATCTTGCTGAAAGCAAACCGGCGTTATTGCCTGAATATTTGAGTAAACATCTGCTTATTTGGGCGGAACATTATTTC
GATTTAGTCGCTCAACAAACGGATTTTCCGTTCTATAAAGGTTTAGCGTTACTGGCTCAACAAACCTTAAAAGATTGGCA
ACAACAGTTGGCAATTATTGTTCCTCAAGTTTCTTTTTATCGTTAA

Upstream 100 bases:

>100_bases
GTATTATTCTACGGTTTACATATGACCTCAGGAATGGCGGTATAACCTAAAATATAATGGTGGGGAAACCCACCGTTATG
CGATAAATAAGGAAAATAAA

Downstream 100 bases:

>100_bases
GCTATGTTAGGTAGAAATAAATTAACGCTACCGGAATTAACACCGAGAGTATTTTCTCGGAGAGAACTGTTTACCGGCTT
TTTGCGTCAAACTCAATCTC

Product: twin-argninine leader-binding protein DmsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MQNELQQWISISGRLLGSLFYYEPNNENVQSALHFFQQENWANEWGELANESQIKQLIAQGLTQDLSEQYQHLFIGPEQL
IAPPWSSVYLDPESVIFGNSLLDLRDFLRKHQIALTQNETEPEDHIGLMLLLAAYLAESKPALLPEYLSKHLLIWAEHYF
DLVAQQTDFPFYKGLALLAQQTLKDWQQQLAIIVPQVSFYR

Sequences:

>Translated_201_residues
MQNELQQWISISGRLLGSLFYYEPNNENVQSALHFFQQENWANEWGELANESQIKQLIAQGLTQDLSEQYQHLFIGPEQL
IAPPWSSVYLDPESVIFGNSLLDLRDFLRKHQIALTQNETEPEDHIGLMLLLAAYLAESKPALLPEYLSKHLLIWAEHYF
DLVAQQTDFPFYKGLALLAQQTLKDWQQQLAIIVPQVSFYR
>Mature_201_residues
MQNELQQWISISGRLLGSLFYYEPNNENVQSALHFFQQENWANEWGELANESQIKQLIAQGLTQDLSEQYQHLFIGPEQL
IAPPWSSVYLDPESVIFGNSLLDLRDFLRKHQIALTQNETEPEDHIGLMLLLAAYLAESKPALLPEYLSKHLLIWAEHYF
DLVAQQTDFPFYKGLALLAQQTLKDWQQQLAIIVPQVSFYR

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=197, Percent_Identity=37.0558375634518, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787272, Length=179, Percent_Identity=27.3743016759777, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 23334; Mature: 23334

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNELQQWISISGRLLGSLFYYEPNNENVQSALHFFQQENWANEWGELANESQIKQLIAQ
CCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
GLTQDLSEQYQHLFIGPEQLIAPPWSSVYLDPESVIFGNSLLDLRDFLRKHQIALTQNET
HHHHHHHHHHHHHHCCHHHHHCCCCCCEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCC
EPEDHIGLMLLLAAYLAESKPALLPEYLSKHLLIWAEHYFDLVAQQTDFPFYKGLALLAQ
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
QTLKDWQQQLAIIVPQVSFYR
HHHHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure
MQNELQQWISISGRLLGSLFYYEPNNENVQSALHFFQQENWANEWGELANESQIKQLIAQ
CCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
GLTQDLSEQYQHLFIGPEQLIAPPWSSVYLDPESVIFGNSLLDLRDFLRKHQIALTQNET
HHHHHHHHHHHHHHCCHHHHHCCCCCCEEECCCHHHHCCHHHHHHHHHHHHHHHHCCCCC
EPEDHIGLMLLLAAYLAESKPALLPEYLSKHLLIWAEHYFDLVAQQTDFPFYKGLALLAQ
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
QTLKDWQQQLAIIVPQVSFYR
HHHHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]