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The map label for this gene is rbsB [H]

Identifier: 126209136

GI number: 126209136

Start: 1898002

End: 1898874

Strand: Direct

Name: rbsB [H]

Synonym: APL_1672

Alternate gene names: 126209136

Gene position: 1898002-1898874 (Clockwise)

Preceding gene: 126209135

Following gene: 126209137

Centisome position: 83.45

GC content: 46.85

Gene sequence:

>873_bases
ATGAAAAAATTAACTTCTTTAGCCCTTGCTCTAGGTTTGGTATTCGGTACAAAAGCAATGGCGCAAGACACATTGGCGTT
AGCGGTTTCTACACTGGATAACCCGTTCTTCGTTACCTTAAAAGAAGGTGCGGAGAAAAAAGCCAAAGACCTCGGTTACA
AATTAGTGGTGTTAGATTCCCAAAATGACCCGGCAAAAGAATTAGCGAACGTGGAAGATCTCACGGTGCGTGGTACGAAG
GTATTACTCATCAACCCGACAGATTCGGAAGCGGTTGGTAATGCGGTGGCGATTGCGAATAAGAAAAATATTCCGGTGAT
CACCTTAGACCGTGGTGCGAATAAAGGCGAAGTGGTGAGCCACATCGCTTCGGATAATGTTGCCGGCGGTAAAATGGCGG
GCGATTTTATCGCGGAGAAAGTCGGTAAAAATGCCAAAGTTATCCAATTAGAAGGCATTGCCGGCACATCAGCTGCACGT
GAACGCGGCGAAGGCTTTAAACAAGCGGTAGCGGCAAACCAATTTGAAGTATTGGCCAGCCAACCGGCGGATTTTGACCG
TACTAAAGGCTTAAACGTAACTGAAAACTTACTGGCAAGTCACGGTGCGGCAAAAGCGGTATTTGCACAAAATGACGAAA
TGGCGTTAGGCGCATTACGTGCGATTAAAGCGGCAGGTAAAGATATTATCGTCGTCGGCTTTGACGGTACGGACGATGCG
GTAAAAGCGGTAAAAGGCGGAAAACTGGCGGCGACTATCGCACAACAACCGGATAAAATCGGTGAGCTAGGCGTAGAAAC
AGCGGATAAATTGCTTAAAGGCGAAAAAGTCGAAGCGAAAATCCCAGTGCCGTTAAAAGTGATTAGTCAGTAA

Upstream 100 bases:

>100_bases
ATCAGCTTGTCGCAAAAGCGTTAGTAATTTTAGCAGCGGTTATTTTGGATAACTTCCTTGGCCGTAAAAAAGCGTAACCT
ACTCTCAAAAGGAGATTTCT

Downstream 100 bases:

>100_bases
TTTTGGCTCCGGAACCGTTATTTTGACGGTTCCGGCATCGCTAGATTTGTTTAAGGTCGGTTTGAGGTAGTTATGAAAAA
ACTTTGTGTGTTGGGCAGCG

Product: D-ribose transporter subunit RbsB

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKKLTSLALALGLVFGTKAMAQDTLALAVSTLDNPFFVTLKEGAEKKAKDLGYKLVVLDSQNDPAKELANVEDLTVRGTK
VLLINPTDSEAVGNAVAIANKKNIPVITLDRGANKGEVVSHIASDNVAGGKMAGDFIAEKVGKNAKVIQLEGIAGTSAAR
ERGEGFKQAVAANQFEVLASQPADFDRTKGLNVTENLLASHGAAKAVFAQNDEMALGALRAIKAAGKDIIVVGFDGTDDA
VKAVKGGKLAATIAQQPDKIGELGVETADKLLKGEKVEAKIPVPLKVISQ

Sequences:

>Translated_290_residues
MKKLTSLALALGLVFGTKAMAQDTLALAVSTLDNPFFVTLKEGAEKKAKDLGYKLVVLDSQNDPAKELANVEDLTVRGTK
VLLINPTDSEAVGNAVAIANKKNIPVITLDRGANKGEVVSHIASDNVAGGKMAGDFIAEKVGKNAKVIQLEGIAGTSAAR
ERGEGFKQAVAANQFEVLASQPADFDRTKGLNVTENLLASHGAAKAVFAQNDEMALGALRAIKAAGKDIIVVGFDGTDDA
VKAVKGGKLAATIAQQPDKIGELGVETADKLLKGEKVEAKIPVPLKVISQ
>Mature_290_residues
MKKLTSLALALGLVFGTKAMAQDTLALAVSTLDNPFFVTLKEGAEKKAKDLGYKLVVLDSQNDPAKELANVEDLTVRGTK
VLLINPTDSEAVGNAVAIANKKNIPVITLDRGANKGEVVSHIASDNVAGGKMAGDFIAEKVGKNAKVIQLEGIAGTSAAR
ERGEGFKQAVAANQFEVLASQPADFDRTKGLNVTENLLASHGAAKAVFAQNDEMALGALRAIKAAGKDIIVVGFDGTDDA
VKAVKGGKLAATIAQQPDKIGELGVETADKLLKGEKVEAKIPVPLKVISQ

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=291, Percent_Identity=73.8831615120275, Blast_Score=418, Evalue=1e-118,
Organism=Escherichia coli, GI1790526, Length=286, Percent_Identity=35.6643356643357, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=31.304347826087, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1790194, Length=254, Percent_Identity=25.9842519685039, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1788473, Length=277, Percent_Identity=28.158844765343, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787948, Length=247, Percent_Identity=24.6963562753036, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786540, Length=226, Percent_Identity=26.5486725663717, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789990, Length=267, Percent_Identity=25.4681647940075, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30134; Mature: 30134

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTSLALALGLVFGTKAMAQDTLALAVSTLDNPFFVTLKEGAEKKAKDLGYKLVVLDS
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCEEEEEEEC
QNDPAKELANVEDLTVRGTKVLLINPTDSEAVGNAVAIANKKNIPVITLDRGANKGEVVS
CCCCHHHHCCCCCEEECCEEEEEECCCCCHHCCCEEEEECCCCCCEEEECCCCCCCHHHH
HIASDNVAGGKMAGDFIAEKVGKNAKVIQLEGIAGTSAARERGEGFKQAVAANQFEVLAS
HHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCHHHHHHHHCHHHHHHC
QPADFDRTKGLNVTENLLASHGAAKAVFAQNDEMALGALRAIKAAGKDIIVVGFDGTDDA
CCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCHHH
VKAVKGGKLAATIAQQPDKIGELGVETADKLLKGEKVEAKIPVPLKVISQ
HHHHCCCCEEEHHHHCCHHHHHCCHHHHHHHHCCCCCEEECCCCHHCCCC
>Mature Secondary Structure
MKKLTSLALALGLVFGTKAMAQDTLALAVSTLDNPFFVTLKEGAEKKAKDLGYKLVVLDS
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCEEEEEEEC
QNDPAKELANVEDLTVRGTKVLLINPTDSEAVGNAVAIANKKNIPVITLDRGANKGEVVS
CCCCHHHHCCCCCEEECCEEEEEECCCCCHHCCCEEEEECCCCCCEEEECCCCCCCHHHH
HIASDNVAGGKMAGDFIAEKVGKNAKVIQLEGIAGTSAARERGEGFKQAVAANQFEVLAS
HHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCHHHHHHHHCHHHHHHC
QPADFDRTKGLNVTENLLASHGAAKAVFAQNDEMALGALRAIKAAGKDIIVVGFDGTDDA
CCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCHHH
VKAVKGGKLAATIAQQPDKIGELGVETADKLLKGEKVEAKIPVPLKVISQ
HHHHCCCCEEEHHHHCCHHHHHCCHHHHHHHHCCCCCEEECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]