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The map label for this gene is rbsR [H]

Identifier: 126209132

GI number: 126209132

Start: 1893943

End: 1894932

Strand: Direct

Name: rbsR [H]

Synonym: APL_1668

Alternate gene names: 126209132

Gene position: 1893943-1894932 (Clockwise)

Preceding gene: 126209130

Following gene: 126209133

Centisome position: 83.27

GC content: 44.95

Gene sequence:

>990_bases
ATGGCAACAATGAAAGATATAGCTCGGATTGCGGGCGTTTCCACTTCCACCGTCTCCCACGTGATCAATAATTCTCGCTT
TGTGAGTGATGAAATTCGTCAGCGGATCGAAAAAGTGGTGGCGGAACTGAATTATACGCCTTCGTTAGTTGCGCGCAGCT
TGAAAGTAAAAGAAACCAATACGATCGGTATGTTAGTCACCACTAGCAGTAACCCGTTTTTTGCGGAAGTAGTACGTCAC
GTCGAACGTTATTGTGAACGCCATAACTATCATTTAATTTTAGTTAATACTGACGGAAACAGCGACAATTTAGCTCAACA
TTTAGACCGCTTGTTACGCAAACAAGTGGACGGCTTATTGTTGATGTGTTCCGAGCCACAAGATTTGGACGAAAGCGTGA
TGGCGAATATTCAATTACCGATGGTGGTGATTGACTGGTGGCAACAGACTCTGAAAGCGGATAACGTACACGAAAATTCG
GAATTAGGCGGTTATCTTGCGACAAAAGCGTTAATTGATGCCGGTTATAGGGAGATAGCGGTGATTACCGGTGAACAATC
GAAATCACACACTTTAAACCGTTTACAAGGTTACAAGCGGGCGATTTTAGAGGCAAATTTGCCAATTCGTCTGGAATGGA
TTGTGGAAGGTCATTTCGATTATCAAGCCGGTTTGGAATGTGCAAGCCGGTTATTGGCACTAAACTCTCGCCCGCAAGCG
ATTTTTGCGATGAGCGATAGCATTGCAATCGGTGTATATCAAGCCGCTTGGCAAGCCGGTTTACGTATTCCGCAAGATAT
TGCGGTGATCGGTTACGATAATATCGAATTGGCACAATATCTCGCTCCTCCGCTTTCTACGATTCATCAACCCAAAGCCC
GTTTGGCGAAGAATGCGGTGGAGCAGTTGATCGCCCGTATTCATCAGCCGGATAAAGCTTATCAAGAAATCGAACTTACT
CCCGAACTTGTCGTTCGCCGTTCTTTTTAA

Upstream 100 bases:

>100_bases
GTCGCTATTTTAACGGAAAGTATGATTTTATGTTTTATTTGCAAAATAACAAGCGGTAAGATTTTAGCAAAATTTTGTAA
AACCTAATGAAGACAATTTT

Downstream 100 bases:

>100_bases
AAAATTTGTGATAGACCTCTCAAATCCGATAAGAAGCGTTTGCTTTTTTAGATGATTTTTTCTATTTTTTATTCATCGAA
ACGTTTCGATAAAGAATAAA

Product: ribose operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRH
VERYCERHNYHLILVNTDGNSDNLAQHLDRLLRKQVDGLLLMCSEPQDLDESVMANIQLPMVVIDWWQQTLKADNVHENS
ELGGYLATKALIDAGYREIAVITGEQSKSHTLNRLQGYKRAILEANLPIRLEWIVEGHFDYQAGLECASRLLALNSRPQA
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLAPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELT
PELVVRRSF

Sequences:

>Translated_329_residues
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRH
VERYCERHNYHLILVNTDGNSDNLAQHLDRLLRKQVDGLLLMCSEPQDLDESVMANIQLPMVVIDWWQQTLKADNVHENS
ELGGYLATKALIDAGYREIAVITGEQSKSHTLNRLQGYKRAILEANLPIRLEWIVEGHFDYQAGLECASRLLALNSRPQA
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLAPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELT
PELVVRRSF
>Mature_328_residues
ATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRHV
ERYCERHNYHLILVNTDGNSDNLAQHLDRLLRKQVDGLLLMCSEPQDLDESVMANIQLPMVVIDWWQQTLKADNVHENSE
LGGYLATKALIDAGYREIAVITGEQSKSHTLNRLQGYKRAILEANLPIRLEWIVEGHFDYQAGLECASRLLALNSRPQAI
FAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLAPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELTP
ELVVRRSF

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=329, Percent_Identity=49.8480243161094, Blast_Score=329, Evalue=1e-91,
Organism=Escherichia coli, GI1787948, Length=330, Percent_Identity=43.3333333333333, Blast_Score=273, Evalue=8e-75,
Organism=Escherichia coli, GI1790369, Length=328, Percent_Identity=32.3170731707317, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787580, Length=311, Percent_Identity=30.8681672025724, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789068, Length=315, Percent_Identity=29.2063492063492, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789202, Length=297, Percent_Identity=30.6397306397306, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788474, Length=307, Percent_Identity=30.2931596091205, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI48994940, Length=309, Percent_Identity=28.8025889967638, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790715, Length=323, Percent_Identity=24.4582043343653, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786540, Length=332, Percent_Identity=28.6144578313253, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786268, Length=318, Percent_Identity=25.1572327044025, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789456, Length=300, Percent_Identity=30.3333333333333, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787906, Length=259, Percent_Identity=26.6409266409266, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1790689, Length=306, Percent_Identity=24.5098039215686, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790192, Length=225, Percent_Identity=26.2222222222222, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36993; Mature: 36862

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETN
CCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEECC
TIGMLVTTSSNPFFAEVVRHVERYCERHNYHLILVNTDGNSDNLAQHLDRLLRKQVDGLL
EEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEE
LMCSEPQDLDESVMANIQLPMVVIDWWQQTLKADNVHENSELGGYLATKALIDAGYREIA
EEECCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
VITGEQSKSHTLNRLQGYKRAILEANLPIRLEWIVEGHFDYQAGLECASRLLALNSRPQA
EEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCE
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLAPPLSTIHQPKARLAKNAV
EEEECCCCEEHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCHHHHHHCHHHHHHHHHH
EQLIARIHQPDKAYQEIELTPELVVRRSF
HHHHHHHCCCCHHHHHHCCCHHHHHCCCC
>Mature Secondary Structure 
ATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETN
CCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEECC
TIGMLVTTSSNPFFAEVVRHVERYCERHNYHLILVNTDGNSDNLAQHLDRLLRKQVDGLL
EEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEE
LMCSEPQDLDESVMANIQLPMVVIDWWQQTLKADNVHENSELGGYLATKALIDAGYREIA
EEECCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
VITGEQSKSHTLNRLQGYKRAILEANLPIRLEWIVEGHFDYQAGLECASRLLALNSRPQA
EEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCE
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLAPPLSTIHQPKARLAKNAV
EEEECCCCEEHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCHHHHHHCHHHHHHHHHH
EQLIARIHQPDKAYQEIELTPELVVRRSF
HHHHHHHCCCCHHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]