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The map label for this gene is rbsD

Identifier: 126209133

GI number: 126209133

Start: 1895053

End: 1895472

Strand: Direct

Name: rbsD

Synonym: APL_1669

Alternate gene names: 126209133

Gene position: 1895053-1895472 (Clockwise)

Preceding gene: 126209132

Following gene: 126209134

Centisome position: 83.32

GC content: 41.19

Gene sequence:

>420_bases
ATGAAAAAAACAGCGGTATTAAATGCACAACTTTCCGGTGTGATTGCCAGTCTAGGACATACGGACGGCTTAACCATTTG
TGACGCCGGCTTACCGATTCCTTCTGAACAACAATGTGTTGATTTAGCCCTGACTAAAGGCGTACCAAGTTTTTTATCTA
CCTTGGAAGTGGTGCTAACTGAACTTTTTGTCGAACGTATTTTATTGGCGGAAGAAATTAAACAAGCTAATCCGACTATC
GAACAACAGTTACTTGAGATGATCAATAAACTTGCTCAAACGCAAGGTCGTCAAATTGAAATCGAATATGTTGTACACAG
TGAATTTAAGCAACGCAGTAATCAAGCGAAAGCGGTAGTGCGTACCGGCGAATGTTCGCCATATGCGAATGTTATTCTTT
ACTCAGGTGTACCGTTCTAG

Upstream 100 bases:

>100_bases
CAAATCCGATAAGAAGCGTTTGCTTTTTTAGATGATTTTTTCTATTTTTTATTCATCGAAACGTTTCGATAAAGAATAAA
GTTACCTAAATGGAGGAAAT

Downstream 100 bases:

>100_bases
AGCGAGGAAAATATGAAAACCTTGTTGAAAATCAGTGGAATTGATAAAGCCTTTCCGGGCGTGCAAGCGTTAAAAAATGC
CTGCCTGAACGTGTATGCGG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKTAVLNAQLSGVIASLGHTDGLTICDAGLPIPSEQQCVDLALTKGVPSFLSTLEVVLTELFVERILLAEEIKQANPTI
EQQLLEMINKLAQTQGRQIEIEYVVHSEFKQRSNQAKAVVRTGECSPYANVILYSGVPF

Sequences:

>Translated_139_residues
MKKTAVLNAQLSGVIASLGHTDGLTICDAGLPIPSEQQCVDLALTKGVPSFLSTLEVVLTELFVERILLAEEIKQANPTI
EQQLLEMINKLAQTQGRQIEIEYVVHSEFKQRSNQAKAVVRTGECSPYANVILYSGVPF
>Mature_139_residues
MKKTAVLNAQLSGVIASLGHTDGLTICDAGLPIPSEQQCVDLALTKGVPSFLSTLEVVLTELFVERILLAEEIKQANPTI
EQQLLEMINKLAQTQGRQIEIEYVVHSEFKQRSNQAKAVVRTGECSPYANVILYSGVPF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=53.2374100719424, Blast_Score=161, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_ACTP2 (A3N2W7)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054358.1
- ProteinModelPortal:   A3N2W7
- SMR:   A3N2W7
- STRING:   A3N2W7
- GeneID:   4850344
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1669
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- PhylomeDB:   A3N2W7
- ProtClustDB:   PRK11797
- BioCyc:   APLE416269:APL_1669-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15198; Mature: 15198

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTAVLNAQLSGVIASLGHTDGLTICDAGLPIPSEQQCVDLALTKGVPSFLSTLEVVLT
CCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
ELFVERILLAEEIKQANPTIEQQLLEMINKLAQTQGRQIEIEYVVHSEFKQRSNQAKAVV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHEE
RTGECSPYANVILYSGVPF
ECCCCCCHHCEEEECCCCC
>Mature Secondary Structure
MKKTAVLNAQLSGVIASLGHTDGLTICDAGLPIPSEQQCVDLALTKGVPSFLSTLEVVLT
CCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
ELFVERILLAEEIKQANPTIEQQLLEMINKLAQTQGRQIEIEYVVHSEFKQRSNQAKAVV
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHEE
RTGECSPYANVILYSGVPF
ECCCCCCHHCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA