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The map label for this gene is secB

Identifier: 126208973

GI number: 126208973

Start: 1725261

End: 1725761

Strand: Direct

Name: secB

Synonym: APL_1509

Alternate gene names: 126208973

Gene position: 1725261-1725761 (Clockwise)

Preceding gene: 126208972

Following gene: 126208974

Centisome position: 75.85

GC content: 40.72

Gene sequence:

>501_bases
ATGGCTGAAGAAAACCAAGTGGCCGCTCCAGAAGAAGCGCAAACTCCGTTCGAACTTCAAATTCAACGTATCTATATCAA
AGACGTTTCATTCGAAGCTCCGAATCTACCGACTATTTTCCATCAAGAATGGAAACCTCAATTAGGTTTTGAACTTGATA
CGGAAACCAAACAGTTAGATGAAGATCTCTATGAAGTGGTATTACACATTAATGTTTCAACTACATTAGAAGATAGCGGC
GATACTGCATTTATCTGTGAAGTGAAACAGGCGGGTGTATTCACAATTAAAGGTATAGAAGGCATTCAATTGGCACATTG
CCTCGCATCACAATGCCCGAACGTACTTTACCCTTATGCTCGCGAATTAATTTCCAGCTTAGTAAACCGTGGTACCTTCC
CTGCATTAAATTTATCTCCGGTAAACTTCGATGCGTTGTTTATGGATTACTTACAACGTCAAGAAGCGGAACAAAACGCG
GAAGCACCTGCAGTAAACTAA

Upstream 100 bases:

>100_bases
TAAAGTGTATGTATTAAAAGAAGGTATTTTAGGCTGGAAAGCTGCGAATCTTCCGACAGTTAAAAAACATAAATAATTTA
AATAGATTAAAGGAAATATT

Downstream 100 bases:

>100_bases
TCTCTTTTAAGGTATGCAAATTGCATACCTTTTCTTTTCTCCACCCAATTCATAACTCAAAACTTTGCATAGGTTTAAAT
AAGCATAATTGACGGATTTA

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MAEENQVAAPEEAQTPFELQIQRIYIKDVSFEAPNLPTIFHQEWKPQLGFELDTETKQLDEDLYEVVLHINVSTTLEDSG
DTAFICEVKQAGVFTIKGIEGIQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEAEQNA
EAPAVN

Sequences:

>Translated_166_residues
MAEENQVAAPEEAQTPFELQIQRIYIKDVSFEAPNLPTIFHQEWKPQLGFELDTETKQLDEDLYEVVLHINVSTTLEDSG
DTAFICEVKQAGVFTIKGIEGIQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEAEQNA
EAPAVN
>Mature_165_residues
AEENQVAAPEEAQTPFELQIQRIYIKDVSFEAPNLPTIFHQEWKPQLGFELDTETKQLDEDLYEVVLHINVSTTLEDSGD
TAFICEVKQAGVFTIKGIEGIQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEAEQNAE
APAVN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=151, Percent_Identity=57.6158940397351, Blast_Score=198, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_ACTP2 (A3N2F7)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054198.1
- ProteinModelPortal:   A3N2F7
- SMR:   A3N2F7
- STRING:   A3N2F7
- GeneID:   4849426
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1509
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   A3N2F7
- ProtClustDB:   PRK05751
- BioCyc:   APLE416269:APL_1509-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18647; Mature: 18516

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEENQVAAPEEAQTPFELQIQRIYIKDVSFEAPNLPTIFHQEWKPQLGFELDTETKQLD
CCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCCCCCCHHHHCCCCCCCCCEECCHHHHHH
EDLYEVVLHINVSTTLEDSGDTAFICEVKQAGVFTIKGIEGIQLAHCLASQCPNVLYPYA
HHHHHHHHHCCCEEEECCCCCEEEEEEECCCCEEEECCCCCHHHHHHHHHHCCCCCCHHH
RELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEAEQNAEAPAVN
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AEENQVAAPEEAQTPFELQIQRIYIKDVSFEAPNLPTIFHQEWKPQLGFELDTETKQLD
CCCCCCCCCCCCCCCHHEEEEEEEEEECCCCCCCCCHHHHCCCCCCCCCEECCHHHHHH
EDLYEVVLHINVSTTLEDSGDTAFICEVKQAGVFTIKGIEGIQLAHCLASQCPNVLYPYA
HHHHHHHHHCCCEEEECCCCCEEEEEEECCCCEEEECCCCCHHHHHHHHHHCCCCCCHHH
RELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEAEQNAEAPAVN
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA