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The map label for this gene is ypjD [H]

Identifier: 126208852

GI number: 126208852

Start: 1587936

End: 1588727

Strand: Direct

Name: ypjD [H]

Synonym: APL_1388

Alternate gene names: 126208852

Gene position: 1587936-1588727 (Clockwise)

Preceding gene: 126208843

Following gene: 126208853

Centisome position: 69.82

GC content: 40.28

Gene sequence:

>792_bases
ATGTTATTTGCGATTTTAGCAATGCTGGCTTATGCTGCCGCATTATTATGGGTTACCCCCACACTCGTCAATTTAGAAAA
CCAAACCGGTGATAAAAAACCGAATCTTAAAGCGGTTTTTGGATTCGGCTTACTTGCCGTATTCTTTCACGCAATCAATT
TATCGCAAGAATTGGTGCTGAGCGAGGGCGGTCAGAATTTCTCACTTTCTAACGTAAACTCAATGATGAGCTTATTGCTG
ACGGCTGTCGCAACACTTGCCTTACCGCGTTGGAAAACCATTTGGTTTCCGTTAATGGTGGTTTATACCTTCGGCATTTG
TAGCGTAGCGGCATCCGCATTTGCCAGCGGTAACTTTATTAAAAATATTGCGCAAAATACCGGTCTGATTTTCCATCTAG
GTATTGCGATTTTTTCCTACGCACTCTTTTTCTTAGCGTTAATTTATGCGTTCCAATTAAAATGGTTGGATAATAAACTG
AAAAGCAAAAAAGCCGTGTTTTGCAGTATGTTACCGCCGTTAATGACGGTAGAACGCCACTTTTTTACGCTGACGTTAGC
CGCTCAAGCGTTATTAACGATAACCCTGATTTCGGGAATGATTTATTTACATAACTTTTTCGCACCGGAACAAATCCATA
AGGCAATATTTTCTTTCCTTGCTTGGATTGTTTACAACATCCAACTTTTAGGGCAATGGAAATTCCGTTGGCGTGGAAAT
CGGGTGCTAATTTATTCGATTTTAGGTACAATGTTATTGACCATCGGTTATTTCGGTAGTCATGTGATCTAA

Upstream 100 bases:

>100_bases
AAATTTTTCACGTCTAACCATAGCAAAAAAGCGATAAAACTGGTAATTTGACTATTCGTATCTGAAAACTATTCTTATTT
TTAATTTAAACGGGATGACA

Downstream 100 bases:

>100_bases
ATATCACCTTAGGAAGCGGTTGGATTTTCAGCGTTTTTTGCAAATTTTTATTCAAATCCGACCGCTTAATTATCCACTTA
CATAGGACATTTATTTTGGA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLFAILAMLAYAAALLWVTPTLVNLENQTGDKKPNLKAVFGFGLLAVFFHAINLSQELVLSEGGQNFSLSNVNSMMSLLL
TAVATLALPRWKTIWFPLMVVYTFGICSVAASAFASGNFIKNIAQNTGLIFHLGIAIFSYALFFLALIYAFQLKWLDNKL
KSKKAVFCSMLPPLMTVERHFFTLTLAAQALLTITLISGMIYLHNFFAPEQIHKAIFSFLAWIVYNIQLLGQWKFRWRGN
RVLIYSILGTMLLTIGYFGSHVI

Sequences:

>Translated_263_residues
MLFAILAMLAYAAALLWVTPTLVNLENQTGDKKPNLKAVFGFGLLAVFFHAINLSQELVLSEGGQNFSLSNVNSMMSLLL
TAVATLALPRWKTIWFPLMVVYTFGICSVAASAFASGNFIKNIAQNTGLIFHLGIAIFSYALFFLALIYAFQLKWLDNKL
KSKKAVFCSMLPPLMTVERHFFTLTLAAQALLTITLISGMIYLHNFFAPEQIHKAIFSFLAWIVYNIQLLGQWKFRWRGN
RVLIYSILGTMLLTIGYFGSHVI
>Mature_263_residues
MLFAILAMLAYAAALLWVTPTLVNLENQTGDKKPNLKAVFGFGLLAVFFHAINLSQELVLSEGGQNFSLSNVNSMMSLLL
TAVATLALPRWKTIWFPLMVVYTFGICSVAASAFASGNFIKNIAQNTGLIFHLGIAIFSYALFFLALIYAFQLKWLDNKL
KSKKAVFCSMLPPLMTVERHFFTLTLAAQALLTITLISGMIYLHNFFAPEQIHKAIFSFLAWIVYNIQLLGQWKFRWRGN
RVLIYSILGTMLLTIGYFGSHVI

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=263, Percent_Identity=36.8821292775665, Blast_Score=169, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29480; Mature: 29480

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEEHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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EEEHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]