Click here to switch to the map view.

The map label for this gene is ybbI [C]

Identifier: 126208728

GI number: 126208728

Start: 1451604

End: 1451990

Strand: Reverse

Name: ybbI [C]

Synonym: APL_1262

Alternate gene names: 126208728

Gene position: 1451990-1451604 (Counterclockwise)

Preceding gene: 126208732

Following gene: 126208727

Centisome position: 63.84

GC content: 39.02

Gene sequence:

>387_bases
ATGAATATTAGTCAAGCAGCAAAACACACAGAATTATCGGCAAAACAAATTCGGGATTATGAAAAAGCCGGTTTATTGCC
GCAAGCAACTCGTTCAAGTAGCGGCTATCGAATTTATTCGGCAGCGGATTTAGAACGGTTACACTTTATCAGTAATGCGC
GCAAAGTCGGATTTTCTTTAGTGCAGATTAGCGAATTATTAAAACTAAATGATGATCCGCATCGTACCAGTCGAGAAGTA
AAACGGCTCACTGAACAGCATATCGAAGAACTTCAGCAGAAAATTACCGATTTACAGCAAATGCTGACATTATTAAAAAG
TTGGAGTAAGTCTTGTTGCGGTAACGACAGTCCGGAATGTTCGATATTAAGCGGTTTAAAACGTTAA

Upstream 100 bases:

>100_bases
CAGACGAAATTTCATAGTTACCTCATAAAAAAGAATGACGAATACTGAATTTCTTTATATGCTAATCCTTAACCCTAGGT
GAAGGTCAAGAGGTAACAGA

Downstream 100 bases:

>100_bases
ATTTTTTGCAACCAGTCGGTGTTTTATTATTTTTTAAATTGTCATCAAATCGTCATATTGTTTTTTTAGAATGCGCGTAA
ACCAAATAATCTATTCCGAA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MNISQAAKHTELSAKQIRDYEKAGLLPQATRSSSGYRIYSAADLERLHFISNARKVGFSLVQISELLKLNDDPHRTSREV
KRLTEQHIEELQQKITDLQQMLTLLKSWSKSCCGNDSPECSILSGLKR

Sequences:

>Translated_128_residues
MNISQAAKHTELSAKQIRDYEKAGLLPQATRSSSGYRIYSAADLERLHFISNARKVGFSLVQISELLKLNDDPHRTSREV
KRLTEQHIEELQQKITDLQQMLTLLKSWSKSCCGNDSPECSILSGLKR
>Mature_128_residues
MNISQAAKHTELSAKQIRDYEKAGLLPQATRSSSGYRIYSAADLERLHFISNARKVGFSLVQISELLKLNDDPHRTSREV
KRLTEQHIEELQQKITDLQQMLTLLKSWSKSCCGNDSPECSILSGLKR

Specific function: Could be a copper-dependent transcriptional activator of the ATPase HI_0290 [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=126, Percent_Identity=42.0634920634921, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1789687, Length=129, Percent_Identity=38.7596899224806, Blast_Score=96, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 14530; Mature: 14530

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISQAAKHTELSAKQIRDYEKAGLLPQATRSSSGYRIYSAADLERLHFISNARKVGFSL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
VQISELLKLNDDPHRTSREVKRLTEQHIEELQQKITDLQQMLTLLKSWSKSCCGNDSPEC
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
SILSGLKR
HHHHHCCC
>Mature Secondary Structure
MNISQAAKHTELSAKQIRDYEKAGLLPQATRSSSGYRIYSAADLERLHFISNARKVGFSL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
VQISELLKLNDDPHRTSREVKRLTEQHIEELQQKITDLQQMLTLLKSWSKSCCGNDSPEC
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
SILSGLKR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]