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The map label for this gene is vsr [H]

Identifier: 126208668

GI number: 126208668

Start: 1382582

End: 1383007

Strand: Reverse

Name: vsr [H]

Synonym: APL_1200

Alternate gene names: 126208668

Gene position: 1383007-1382582 (Counterclockwise)

Preceding gene: 126208669

Following gene: 126208665

Centisome position: 60.81

GC content: 34.51

Gene sequence:

>426_bases
ATGACCGATATTTTCTCTCCTCAAAAACGTTCTGAAATAATGTCTAGGGTTAAAAGTAAAAATACTAAACCCGAGATAAT
TGTTAGAACGTTTTTATTTTCAGTGGGTTTTCGTTATCGGAAAAACGATAAACGATATGCGGGAGTACCCGATATTCTCT
TACCGAAATATAAAACGGCAATTTTCGTACACGGTTGCTTTTGGCACGGACATACTTGTGCTAAAGGTGGTTTACCTTCT
AGCCGTACCGAGTTTTGGAAGAATAAAATCATGAAAAATAAAGAACGGGATGTAAAAAATATTCGATTACTTGAGGATTC
GGGGATTCACGTTATTATTATTTGGGAATGCGAATTGAAAAATAAGACGTTACGTGAAAAACGTTTAGCTCGTTTAGTTA
ACGAAATAAAACATTATCGTGATTAA

Upstream 100 bases:

>100_bases
GAGTTCTAATTTATTTACTGAAAAAGATTGCTTAGATGCATTAGGATTACTTTCTCATTTGCAAAGAAGATTGGATGATT
CAGAATTAGAGTAATTTTTA

Downstream 100 bases:

>100_bases
ACAAAATAGTCTGCCTTTTTGCATTTTATATACCTATTTAAAAACAAGCGGTGGTAAATTACCTAAAAATTTACTACCGC
TTCCGTTTATATTACTAGCA

Product: putative DNA mismatch endonuclease

Products: DNA [C]

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MTDIFSPQKRSEIMSRVKSKNTKPEIIVRTFLFSVGFRYRKNDKRYAGVPDILLPKYKTAIFVHGCFWHGHTCAKGGLPS
SRTEFWKNKIMKNKERDVKNIRLLEDSGIHVIIIWECELKNKTLREKRLARLVNEIKHYRD

Sequences:

>Translated_141_residues
MTDIFSPQKRSEIMSRVKSKNTKPEIIVRTFLFSVGFRYRKNDKRYAGVPDILLPKYKTAIFVHGCFWHGHTCAKGGLPS
SRTEFWKNKIMKNKERDVKNIRLLEDSGIHVIIIWECELKNKTLREKRLARLVNEIKHYRD
>Mature_140_residues
TDIFSPQKRSEIMSRVKSKNTKPEIIVRTFLFSVGFRYRKNDKRYAGVPDILLPKYKTAIFVHGCFWHGHTCAKGGLPSS
RTEFWKNKIMKNKERDVKNIRLLEDSGIHVIIIWECELKNKTLREKRLARLVNEIKHYRD

Specific function: May nick specific sequences that contain T:G mispairs resulting from m5C-deamination [H]

COG id: COG3727

COG function: function code L; DNA G:T-mismatch repair endonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vsr family [H]

Homologues:

Organism=Escherichia coli, GI1788270, Length=122, Percent_Identity=38.5245901639344, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR011335 [H]

Pfam domain/function: PF03852 Vsr [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 16735; Mature: 16604

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIFSPQKRSEIMSRVKSKNTKPEIIVRTFLFSVGFRYRKNDKRYAGVPDILLPKYKTA
CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
IFVHGCFWHGHTCAKGGLPSSRTEFWKNKIMKNKERDVKNIRLLEDSGIHVIIIWECELK
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHEEEEECCCCEEEEEEEECCC
NKTLREKRLARLVNEIKHYRD
CCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDIFSPQKRSEIMSRVKSKNTKPEIIVRTFLFSVGFRYRKNDKRYAGVPDILLPKYKTA
CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
IFVHGCFWHGHTCAKGGLPSSRTEFWKNKIMKNKERDVKNIRLLEDSGIHVIIIWECELK
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHEEEEECCCCEEEEEEEECCC
NKTLREKRLARLVNEIKHYRD
CCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: DNA mismatch endonuclease vsr specifically recognizes a T-G mismatch in a special context related to the dcm methylation sequence and makes an incision 5' to the mismatched T residue [C]

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]