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The map label for this gene is yqhC [H]

Identifier: 126208657

GI number: 126208657

Start: 1367935

End: 1368357

Strand: Direct

Name: yqhC [H]

Synonym: APL_1189

Alternate gene names: 126208657

Gene position: 1367935-1368357 (Clockwise)

Preceding gene: 126208655

Following gene: 126208659

Centisome position: 60.14

GC content: 41.61

Gene sequence:

>423_bases
GTGCCGCATATTCCAAAAACAATTGCAAAAAATCAACCAAAATCGACCGCTTTCTTACAATGGCAACTGGAAGAAAATCT
ATTGGCTCAGTTTGAGCGCCTGATTGACTTGCTCAAAACACCGGAAGATATAGATTTTCTTGCGCCGCTTATTCAACAAC
AAATTTACTATGTTCTACTCAAAAGTAATCAAGGGCAAAAATTAAGAGAACTCGTTAATGAAGGAAGCCATACCCAGCGT
ATAGCCCAAACTGCGTTTTGGATCGAGCAACATTTGTCTGAGCCGTTACGGGTGGAGGATTTGGCGAAACAGGCGGGAAT
GTCGGTCTCCGGCTTTCATTCGCATTTAAAAAAAATGACCAATATGTCGCCGTTACAATATCAAAAATCACACCGCTTAC
TGGCTGCACAACGTTTGATCTAA

Upstream 100 bases:

>100_bases
CGGTAAATGTGCCATTGTCGGTAGAAGTGGTGGAAGCAAACCCTGAAAAGCCCTACTTGATGATGACGATGAAAATCGAC
CTAAAATGGTGGCAAGTATC

Downstream 100 bases:

>100_bases
GCCAAACAGAGCAATATCGCAAGCGTTGCTTTCCAAGTCGGTTACGAAAGTCCAAATCAGTTTAGCCGAGAATATAAAAG
ACATTTTGGGGTAAGCCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MPHIPKTIAKNQPKSTAFLQWQLEENLLAQFERLIDLLKTPEDIDFLAPLIQQQIYYVLLKSNQGQKLRELVNEGSHTQR
IAQTAFWIEQHLSEPLRVEDLAKQAGMSVSGFHSHLKKMTNMSPLQYQKSHRLLAAQRLI

Sequences:

>Translated_140_residues
MPHIPKTIAKNQPKSTAFLQWQLEENLLAQFERLIDLLKTPEDIDFLAPLIQQQIYYVLLKSNQGQKLRELVNEGSHTQR
IAQTAFWIEQHLSEPLRVEDLAKQAGMSVSGFHSHLKKMTNMSPLQYQKSHRLLAAQRLI
>Mature_139_residues
PHIPKTIAKNQPKSTAFLQWQLEENLLAQFERLIDLLKTPEDIDFLAPLIQQQIYYVLLKSNQGQKLRELVNEGSHTQRI
AQTAFWIEQHLSEPLRVEDLAKQAGMSVSGFHSHLKKMTNMSPLQYQKSHRLLAAQRLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=118, Percent_Identity=39.8305084745763, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 16226; Mature: 16095

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHIPKTIAKNQPKSTAFLQWQLEENLLAQFERLIDLLKTPEDIDFLAPLIQQQIYYVLL
CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KSNQGQKLRELVNEGSHTQRIAQTAFWIEQHLSEPLRVEDLAKQAGMSVSGFHSHLKKMT
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
NMSPLQYQKSHRLLAAQRLI
CCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PHIPKTIAKNQPKSTAFLQWQLEENLLAQFERLIDLLKTPEDIDFLAPLIQQQIYYVLL
CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KSNQGQKLRELVNEGSHTQRIAQTAFWIEQHLSEPLRVEDLAKQAGMSVSGFHSHLKKMT
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
NMSPLQYQKSHRLLAAQRLI
CCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]