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The map label for this gene is rimN

Identifier: 126208610

GI number: 126208610

Start: 1316862

End: 1317416

Strand: Reverse

Name: rimN

Synonym: APL_1140

Alternate gene names: 126208610

Gene position: 1317416-1316862 (Counterclockwise)

Preceding gene: 126208611

Following gene: 126208609

Centisome position: 57.92

GC content: 40.36

Gene sequence:

>555_bases
ATGAATAACTTAGAAAATATTGTTGAGCAATTAAAACGGAATCGTGTGGTTGCTTATCCTACCGAAGCGGTCTTCGGTTT
AGGTTGTAATCCTAATAATGAGTCAGCCGTGCGAGCTTTATTAAAATTAAAAAAACGGCCGGAAGAAAAAGGGCTTATTC
TGATAGCTCCAACCAAAGAGCTATTACTTCCTTATATTGATGAGAATAAATTAACCGCAGCGCATTGGCAAATTTTTGAA
ACGCCTTCGGAACGAGCGATTACTTGGGTAATGCCCGCTAAAAAGGCGGTTCCTCAATATTTGACCGGGCAATTTGATAC
GATTGCTGTACGTTTATGCTGTATTCCTGCAGTAATTGATCTTTGTGAACGTACCGGATTTGCTCTAACTTCAACCAGTT
GCAATTTAACCGGACAAGAACCGTGCCGAACGGCAGATGAAGTCAAATTGCAATTCGGTGCGGATTTTCCTGTATTGGAA
GCGGAGACTGCTGGCAAAACCAATCCTCCTGAAATTCGAGATATTTTTACACAACATATTTTTAGACAAGGATAA

Upstream 100 bases:

>100_bases
CCTCAATGCCAATGTTCAATCGTGACGCTTAAGAAGCAGCGTGGAAAATCGATGTATCTATGTGCGAATAAGTCATGCCA
ATATCTATTTAGTGAAGAAA

Downstream 100 bases:

>100_bases
ATAAACATGAATCAGTATGCAGTATGGGGAAATCCGATTGCGCAAAGTAAGTCACCTCGTATTCATCAACTTTTTGGCGA
GCAAACCGGTAAGTCTATTA

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKELLLPYIDENKLTAAHWQIFE
TPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDLCERTGFALTSTSCNLTGQEPCRTADEVKLQFGADFPVLE
AETAGKTNPPEIRDIFTQHIFRQG

Sequences:

>Translated_184_residues
MNNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKELLLPYIDENKLTAAHWQIFE
TPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDLCERTGFALTSTSCNLTGQEPCRTADEVKLQFGADFPVLE
AETAGKTNPPEIRDIFTQHIFRQG
>Mature_184_residues
MNNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKELLLPYIDENKLTAAHWQIFE
TPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDLCERTGFALTSTSCNLTGQEPCRTADEVKLQFGADFPVLE
AETAGKTNPPEIRDIFTQHIFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=188, Percent_Identity=50.531914893617, Blast_Score=187, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_ACTP2 (A3N1E4)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001053835.1
- ProteinModelPortal:   A3N1E4
- STRING:   A3N1E4
- GeneID:   4849072
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1140
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- PhylomeDB:   A3N1E4
- ProtClustDB:   CLSK918794
- BioCyc:   APLE416269:APL_1140-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 20555; Mature: 20555

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKE
CCHHHHHHHHHHHCCEEEECCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHH
LLLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVID
HHCCCCCCCCEEHHHEEEEECCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
LCERTGFALTSTSCNLTGQEPCRTADEVKLQFGADFPVLEAETAGKTNPPEIRDIFTQHI
HHHHCCCEEECCCCCCCCCCCCCCHHHEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHH
FRQG
HHCC
>Mature Secondary Structure
MNNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKE
CCHHHHHHHHHHHCCEEEECCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHH
LLLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVID
HHCCCCCCCCEEHHHEEEEECCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
LCERTGFALTSTSCNLTGQEPCRTADEVKLQFGADFPVLEAETAGKTNPPEIRDIFTQHI
HHHHCCCEEECCCCCCCCCCCCCCHHHEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHH
FRQG
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA