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The map label for this gene is arcD [H]

Identifier: 126208554

GI number: 126208554

Start: 1251451

End: 1252866

Strand: Direct

Name: arcD [H]

Synonym: APL_1082

Alternate gene names: 126208554

Gene position: 1251451-1252866 (Clockwise)

Preceding gene: 126208553

Following gene: 126208555

Centisome position: 55.02

GC content: 40.47

Gene sequence:

>1416_bases
ATGTCAAACAAAAAAATTGGGTTACTTTCTTTAACTGCTCTGGTTCTCAGTTCGATGATTGGTTCCGGTATTTTCAGTCT
GCCGCAAAATATGGCGGCGGTCGCCGGCGGTGAAGCGTTAATTCTCGGCTGGATCATTACCGGTATCGGAATTATTTTCC
TCGGGCTTTCTTTCTTCTTTATTTCTCGCTTACGTCCGGATTTAGACGGCGGTATTTATACTTATGCACGTGAAGGCTTT
GGCGATTTAGTCGGTTTCCTCTCTGCTTGGGGTTACTGGCTGTGTGCAACCATCGGAATTGTCGGCTATTTAGTGGTAGC
GTTTGAGGGAATCGGTTCATTTACCGATACGGAATCGAATATTATTTTCGGACAAGGCAATACGCTTGCTTCATTTATCG
GCGCTTCAATTATCGTGTGGTTAGTTCACGCTTTAGTAGCTAGCGGTGTAAAAGAAGCGGCAACGGTAAACTTGATTGCA
ACTTTTGTGAAAGTATTTCCGCTCGTGCTATTTATCGGTTTGGCAATTTGGTATTTCAAAGGCGAAACCTTTAATCAAGA
TCTGCAAGGTACGGCTCTCAATAACAGCGTATCGGAACAAGTTAAAAACACGATGTTAATTACCCTTTGGGTATTTACCG
GTGTGGAAGGCGCTTCTGTATTATCCGCTCACGCTAAAAAGAAAAGTGATGTCGGTTTAGCGACCGTTCTCGGGATTCTG
ATTGCATTAGTTTTATATATTGCAATTACCGTGCTTTCACTCGGCATTTTACCGCGTGAAACCATTGCGGAGATGTCAAA
CCCGTCAATGGCAGGTTTATTAGAAACAATGATCGGTTCAAGCGGTAAGATTTTAATTACTTTTTGCTTAATTGTATCGG
TGTTGGCTTCTTATGTGAGCTGGACAATGTATTCGGCGGAAGTACCTTATCGTGGTGCGAAAAACGGTGCATTCCCTAAA
ATTTTAGATAAGCTTAACGCAAATGAAGTGCCGATTAATTCGCTTTGGTTTACCGGTTTTGTGGTGCAATTCTGTTTATT
CCTTGTATTATTAACCGGTAAAAGCTACAACGCTTTATTATTAATTTCGACTTCAATGATCCTTGTGCCTTATTTCTTAA
TCGGTGCATATTTATTGAAGTTATCATTCCAACAAAATTCAGCGAGGTATATCAAACTGACCGGTTTTATCGCATCAATT
TACGGTTTATGGATTGTCTATGCGGCGGGTTTAGATTACTTATTATTGTCGGTATTACTTTATGCGCCTGGCATTGGCTT
ATTCCTTTACTCACGCTATCAACATCAAGGAAAAGCATTAAACCTTTCGACTTTTGAGAAAACTTTATTAGTGCTTATCG
GTTTCTTGTTTATTTGGGCGGTTTATAATAGTTTTACCAACGTTGATTGGAGCTAA

Upstream 100 bases:

>100_bases
TTAAAATAACAGGAGAAGCGGTCAAAATTGGCAATTTTTTGCAAAAAATCCGCAAAATTTAACCGCTTGTATCAAACACA
ACATCAAAATAAGGGCAATT

Downstream 100 bases:

>100_bases
AAAGATAATATCCTCTCGTGCTTCGGCATTAGAGGATTTTTTATTTTTATGCTAAATTATGCAGTTTGTATGAATAACAA
TTATAAGGGCATTGCATGTC

Product: putative arginine/ornithine antiporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MSNKKIGLLSLTALVLSSMIGSGIFSLPQNMAAVAGGEALILGWIITGIGIIFLGLSFFFISRLRPDLDGGIYTYAREGF
GDLVGFLSAWGYWLCATIGIVGYLVVAFEGIGSFTDTESNIIFGQGNTLASFIGASIIVWLVHALVASGVKEAATVNLIA
TFVKVFPLVLFIGLAIWYFKGETFNQDLQGTALNNSVSEQVKNTMLITLWVFTGVEGASVLSAHAKKKSDVGLATVLGIL
IALVLYIAITVLSLGILPRETIAEMSNPSMAGLLETMIGSSGKILITFCLIVSVLASYVSWTMYSAEVPYRGAKNGAFPK
ILDKLNANEVPINSLWFTGFVVQFCLFLVLLTGKSYNALLLISTSMILVPYFLIGAYLLKLSFQQNSARYIKLTGFIASI
YGLWIVYAAGLDYLLLSVLLYAPGIGLFLYSRYQHQGKALNLSTFEKTLLVLIGFLFIWAVYNSFTNVDWS

Sequences:

>Translated_471_residues
MSNKKIGLLSLTALVLSSMIGSGIFSLPQNMAAVAGGEALILGWIITGIGIIFLGLSFFFISRLRPDLDGGIYTYAREGF
GDLVGFLSAWGYWLCATIGIVGYLVVAFEGIGSFTDTESNIIFGQGNTLASFIGASIIVWLVHALVASGVKEAATVNLIA
TFVKVFPLVLFIGLAIWYFKGETFNQDLQGTALNNSVSEQVKNTMLITLWVFTGVEGASVLSAHAKKKSDVGLATVLGIL
IALVLYIAITVLSLGILPRETIAEMSNPSMAGLLETMIGSSGKILITFCLIVSVLASYVSWTMYSAEVPYRGAKNGAFPK
ILDKLNANEVPINSLWFTGFVVQFCLFLVLLTGKSYNALLLISTSMILVPYFLIGAYLLKLSFQQNSARYIKLTGFIASI
YGLWIVYAAGLDYLLLSVLLYAPGIGLFLYSRYQHQGKALNLSTFEKTLLVLIGFLFIWAVYNSFTNVDWS
>Mature_470_residues
SNKKIGLLSLTALVLSSMIGSGIFSLPQNMAAVAGGEALILGWIITGIGIIFLGLSFFFISRLRPDLDGGIYTYAREGFG
DLVGFLSAWGYWLCATIGIVGYLVVAFEGIGSFTDTESNIIFGQGNTLASFIGASIIVWLVHALVASGVKEAATVNLIAT
FVKVFPLVLFIGLAIWYFKGETFNQDLQGTALNNSVSEQVKNTMLITLWVFTGVEGASVLSAHAKKKSDVGLATVLGILI
ALVLYIAITVLSLGILPRETIAEMSNPSMAGLLETMIGSSGKILITFCLIVSVLASYVSWTMYSAEVPYRGAKNGAFPKI
LDKLNANEVPINSLWFTGFVVQFCLFLVLLTGKSYNALLLISTSMILVPYFLIGAYLLKLSFQQNSARYIKLTGFIASIY
GLWIVYAAGLDYLLLSVLLYAPGIGLFLYSRYQHQGKALNLSTFEKTLLVLIGFLFIWAVYNSFTNVDWS

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=459, Percent_Identity=54.2483660130719, Blast_Score=479, Evalue=1e-136,
Organism=Escherichia coli, GI2367353, Length=424, Percent_Identity=29.2452830188679, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1786908, Length=424, Percent_Identity=23.8207547169811, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1790575, Length=467, Percent_Identity=25.0535331905782, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87082250, Length=343, Percent_Identity=24.198250728863, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004754 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51047; Mature: 50916

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SNKKIGLLSLTALVLSSMIGSGIFSLPQNMAAVAGGEALILGWIITGIGIIFLGLSFFF
CCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH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HCCCHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]