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The map label for this gene is yjcD [C]

Identifier: 126208543

GI number: 126208543

Start: 1239071

End: 1240372

Strand: Direct

Name: yjcD [C]

Synonym: APL_1071

Alternate gene names: 126208543

Gene position: 1239071-1240372 (Clockwise)

Preceding gene: 126208542

Following gene: 126208545

Centisome position: 54.48

GC content: 43.63

Gene sequence:

>1302_bases
ATGTCTTTGTTCAAATTTGAAGAACGTGGCACCAATACCCGCCAAGAAATTATTTCGGGCTTAACCACATTCTTAGCTAT
GGTGTACTCGGTAATTGTTGTGCCGGGTATGTTAAGCCAAGCAGGTTTTCCGGCTGAATCGGTATTTATCGCAACCTGTT
TAGTGTCGGGTTTAGGTTCAATTTTAATCGGCTTATGGGCAAATGCACCAATGGCGATCGGCTGTGCGATTTCTTTAACC
GCATTTACCGCATTCAGTTTAGTGCTTGGTCAAGGTATCTCGATTCCGGTGGCACTTGGTGCAATTTTCTTAATGGGGGT
ATTATTCACACTCATTTCGGTAACCGGCATCCGTGCGTGGATTTTACGTAACCTGCCGGCAAGCATTGCACACGGAGCAG
GTATCGGTATCGGTTTATTTTTACTGTTAATCGCGGCGAACGGCGTGGGCTTAGTGGTTGGCAATCAAGCCGGTTTACCG
GTAAAAATGGGCGATTTCACCTCATTCCCGGTCATTATGGCGTTACTTGGCTTAGCGGCGATTATCGGCTTAGAGCGTTT
AAAAGTGAAAGGCAGCATTTTATGGGTAATTATTGCGATCACCATCATCGGTTTAGTGTTTGATCCGAACGTAAAATATG
CCGGTTTCTTCAAAATGCCTAGCTTTGGAGAAAATTCTCAATTCTTAAATCTTGATGTAATGGGTGCATTAAATACTGCG
ATTTTACCGGTGGTATTTGCGTTAGTAATGACGGCAATTTTTGACGCAACCGGTACAATTCGTGCGGTAGCGGGTCAAGC
GAATTTATTAGATAAAGACGGTCAAATTATTAACGGTGATAAAGCCTTAACCTCTGACTCATTAGGTTCTGTACTTTCAG
GTTTATTCGGTACGGCACCGGCAGCGGTTTATATTGAGTCGGCGGCAGGTACGGCGGTTGGCGGTAAAACCGGTTTAACC
GCAGTCGTTGTCGGTATCGGTTTCTTATTAATGTTATTTTTCCAACCGCTTGCGTTCTTAGTACCGGGTTATGCAACGGC
TCCGGCATTAATGTACGTCGGTTTATTAATGTTAAGTAACGTTTCAAAATTAGATTTCGATGATTTCGTCGGCGCAATGT
CAGGCTTAGTGTGTGCGGTATTTATCGTATTAACCGCCAATATCGTAACCGGTATTATGCTTGGTTTTGCCGCATTAGTG
ATCGGTCGTATCATTTCGGGTGAATTCAAAAAACTCAACGTCGGTACGGTAATCATTGCAATTGCGTTAGTAGCTTTCTA
CGCATTTGAATTAGCAATCTAA

Upstream 100 bases:

>100_bases
CTTATTTATTGTATTTTATGCAAACGTTTGCTTATCAGGTCTGACTTCTGTAGAATTCGTTCCTTAAAATTTTATTTCGT
TTATTTGAGGTTTTCATTTT

Downstream 100 bases:

>100_bases
TCTCAAAAAAAGACCGCTTGTAAGCCTATAACGTGGCAAACAAGCGGTCTAATCTTTTAAAAAATTTGCAAATCAAATTG
CTTTAATAATTCGGCAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MSLFKFEERGTNTRQEIISGLTTFLAMVYSVIVVPGMLSQAGFPAESVFIATCLVSGLGSILIGLWANAPMAIGCAISLT
AFTAFSLVLGQGISIPVALGAIFLMGVLFTLISVTGIRAWILRNLPASIAHGAGIGIGLFLLLIAANGVGLVVGNQAGLP
VKMGDFTSFPVIMALLGLAAIIGLERLKVKGSILWVIIAITIIGLVFDPNVKYAGFFKMPSFGENSQFLNLDVMGALNTA
ILPVVFALVMTAIFDATGTIRAVAGQANLLDKDGQIINGDKALTSDSLGSVLSGLFGTAPAAVYIESAAGTAVGGKTGLT
AVVVGIGFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLVCAVFIVLTANIVTGIMLGFAALV
IGRIISGEFKKLNVGTVIIAIALVAFYAFELAI

Sequences:

>Translated_433_residues
MSLFKFEERGTNTRQEIISGLTTFLAMVYSVIVVPGMLSQAGFPAESVFIATCLVSGLGSILIGLWANAPMAIGCAISLT
AFTAFSLVLGQGISIPVALGAIFLMGVLFTLISVTGIRAWILRNLPASIAHGAGIGIGLFLLLIAANGVGLVVGNQAGLP
VKMGDFTSFPVIMALLGLAAIIGLERLKVKGSILWVIIAITIIGLVFDPNVKYAGFFKMPSFGENSQFLNLDVMGALNTA
ILPVVFALVMTAIFDATGTIRAVAGQANLLDKDGQIINGDKALTSDSLGSVLSGLFGTAPAAVYIESAAGTAVGGKTGLT
AVVVGIGFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLVCAVFIVLTANIVTGIMLGFAALV
IGRIISGEFKKLNVGTVIIAIALVAFYAFELAI
>Mature_432_residues
SLFKFEERGTNTRQEIISGLTTFLAMVYSVIVVPGMLSQAGFPAESVFIATCLVSGLGSILIGLWANAPMAIGCAISLTA
FTAFSLVLGQGISIPVALGAIFLMGVLFTLISVTGIRAWILRNLPASIAHGAGIGIGLFLLLIAANGVGLVVGNQAGLPV
KMGDFTSFPVIMALLGLAAIIGLERLKVKGSILWVIIAITIIGLVFDPNVKYAGFFKMPSFGENSQFLNLDVMGALNTAI
LPVVFALVMTAIFDATGTIRAVAGQANLLDKDGQIINGDKALTSDSLGSVLSGLFGTAPAAVYIESAAGTAVGGKTGLTA
VVVGIGFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSNVSKLDFDDFVGAMSGLVCAVFIVLTANIVTGIMLGFAALVI
GRIISGEFKKLNVGTVIIAIALVAFYAFELAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=434, Percent_Identity=74.4239631336406, Blast_Score=629, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=436, Percent_Identity=74.3119266055046, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI87082309, Length=423, Percent_Identity=39.2434988179669, Blast_Score=281, Evalue=8e-77,
Organism=Escherichia coli, GI1790150, Length=419, Percent_Identity=37.2315035799523, Blast_Score=251, Evalue=9e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 44745; Mature: 44614

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFKFEERGTNTRQEIISGLTTFLAMVYSVIVVPGMLSQAGFPAESVFIATCLVSGLGS
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHH
ILIGLWANAPMAIGCAISLTAFTAFSLVLGQGISIPVALGAIFLMGVLFTLISVTGIRAW
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILRNLPASIAHGAGIGIGLFLLLIAANGVGLVVGNQAGLPVKMGDFTSFPVIMALLGLAA
HHHCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEECCCCCHHHHHHHHHHHHH
IIGLERLKVKGSILWVIIAITIIGLVFDPNVKYAGFFKMPSFGENSQFLNLDVMGALNTA
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHH
ILPVVFALVMTAIFDATGTIRAVAGQANLLDKDGQIINGDKALTSDSLGSVLSGLFGTAP
HHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEECCCCHHCHHHHHHHHHHHHCCCC
AAVYIESAAGTAVGGKTGLTAVVVGIGFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSN
HHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
VSKLDFDDFVGAMSGLVCAVFIVLTANIVTGIMLGFAALVIGRIISGEFKKLNVGTVIIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHH
IALVAFYAFELAI
HHHHHHHHHHHCC
>Mature Secondary Structure 
SLFKFEERGTNTRQEIISGLTTFLAMVYSVIVVPGMLSQAGFPAESVFIATCLVSGLGS
CCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHH
ILIGLWANAPMAIGCAISLTAFTAFSLVLGQGISIPVALGAIFLMGVLFTLISVTGIRAW
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILRNLPASIAHGAGIGIGLFLLLIAANGVGLVVGNQAGLPVKMGDFTSFPVIMALLGLAA
HHHCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEECCCCCHHHHHHHHHHHHH
IIGLERLKVKGSILWVIIAITIIGLVFDPNVKYAGFFKMPSFGENSQFLNLDVMGALNTA
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHH
ILPVVFALVMTAIFDATGTIRAVAGQANLLDKDGQIINGDKALTSDSLGSVLSGLFGTAP
HHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEECCCCHHCHHHHHHHHHHHHCCCC
AAVYIESAAGTAVGGKTGLTAVVVGIGFLLMLFFQPLAFLVPGYATAPALMYVGLLMLSN
HHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
VSKLDFDDFVGAMSGLVCAVFIVLTANIVTGIMLGFAALVIGRIISGEFKKLNVGTVIIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHH
IALVAFYAFELAI
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]