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The map label for this gene is kdkA [H]

Identifier: 126208380

GI number: 126208380

Start: 1046562

End: 1047266

Strand: Direct

Name: kdkA [H]

Synonym: APL_0904

Alternate gene names: 126208380

Gene position: 1046562-1047266 (Clockwise)

Preceding gene: 126208377

Following gene: 126208384

Centisome position: 46.01

GC content: 39.57

Gene sequence:

>705_bases
ATGATTTTTTACCACTTTAATCGCACTGTTGTTCCAGATACTCAAACTTCACTAATTAAAACTTTATTCGGTTGCAAAAA
TTTTGCCGATTCCGGCCGCTTGTTAGGCTCGTCCAAAGGCAGAGGCACTACTTGGTTTCTAAACACGCAAGCCGAATTGG
GCGTAAATACGGTACTTCGTCATTACTATCGCGGCGGGCTATTCGGTAAAATCGTCAAAGATCAGTATCTATTTAACGGG
CTGGAAAACACCCGAGCTTTTCAAGAATTTTCCTTATTGGAAAAATTGCACGAATGGCATTTACCCGTCCCTCAACCGAT
TGCGTTAAAAGTGGAAAAAACCTGTTGTTGGTATCGAGCGGATATTATGTTGGAAAAAATCGAAGGCACACAAGATTTGA
GTAAATATCTCCAAACCAATGCGCTTTCCGACACGCAATATCAACAAATCGGTAAATTGATTCGTCAATTACACGATCAT
CAAGTGCATCATTCGGATTTGAATATCCATAATATTTTGCTTGACCCAGCAAGCGGTCGATTTTTCTTAATTGATTTCGA
TAAATGCGGTATTTCGCAAGCTAATGATTGGAAAACGGAAAATTTAGCCCGCTTACTACGTTCGTTTAAAAAGGAGCAAA
CTCGTTTAAATATTCGATTTAACGAGCAAAATTGGCAAGCCTTGCTCGCGGGTTACCATAAATAA

Upstream 100 bases:

>100_bases
TGGGGTTCCTCTAAAAATCAAGGCGAGAATTTTAACAAATTGACATCAAAAAAAATAGCACTAAAATTTATCTCAATAAT
AACTCGTCCCAATAATCCGT

Downstream 100 bases:

>100_bases
TGCTATTAATAAAAAAGAAGAAAGTTTGAAAGGCTTTCTTCTTTAGCTATATGAAATATATGACGTTCACGTATTACGGT
TAATTCTCAAAAGAAACCTT

Product: 3-deoxy-D-manno-octulosonic-acid kinase

Products: NA

Alternate protein names: KDO kinase [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MIFYHFNRTVVPDTQTSLIKTLFGCKNFADSGRLLGSSKGRGTTWFLNTQAELGVNTVLRHYYRGGLFGKIVKDQYLFNG
LENTRAFQEFSLLEKLHEWHLPVPQPIALKVEKTCCWYRADIMLEKIEGTQDLSKYLQTNALSDTQYQQIGKLIRQLHDH
QVHHSDLNIHNILLDPASGRFFLIDFDKCGISQANDWKTENLARLLRSFKKEQTRLNIRFNEQNWQALLAGYHK

Sequences:

>Translated_234_residues
MIFYHFNRTVVPDTQTSLIKTLFGCKNFADSGRLLGSSKGRGTTWFLNTQAELGVNTVLRHYYRGGLFGKIVKDQYLFNG
LENTRAFQEFSLLEKLHEWHLPVPQPIALKVEKTCCWYRADIMLEKIEGTQDLSKYLQTNALSDTQYQQIGKLIRQLHDH
QVHHSDLNIHNILLDPASGRFFLIDFDKCGISQANDWKTENLARLLRSFKKEQTRLNIRFNEQNWQALLAGYHK
>Mature_234_residues
MIFYHFNRTVVPDTQTSLIKTLFGCKNFADSGRLLGSSKGRGTTWFLNTQAELGVNTVLRHYYRGGLFGKIVKDQYLFNG
LENTRAFQEFSLLEKLHEWHLPVPQPIALKVEKTCCWYRADIMLEKIEGTQDLSKYLQTNALSDTQYQQIGKLIRQLHDH
QVHHSDLNIHNILLDPASGRFFLIDFDKCGISQANDWKTENLARLLRSFKKEQTRLNIRFNEQNWQALLAGYHK

Specific function: ATP-dependent phosphorylation of 3-deoxy-D-manno- octulosonic acid at the 4-OH position [H]

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022826
- InterPro:   IPR011009
- InterPro:   IPR010440 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: NA

Molecular weight: Translated: 27262; Mature: 27262

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFYHFNRTVVPDTQTSLIKTLFGCKNFADSGRLLGSSKGRGTTWFLNTQAELGVNTVLR
CEEEEECCEECCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEECCHHCCHHHHHH
HYYRGGLFGKIVKDQYLFNGLENTRAFQEFSLLEKLHEWHLPVPQPIALKVEKTCCWYRA
HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHH
DIMLEKIEGTQDLSKYLQTNALSDTQYQQIGKLIRQLHDHQVHHSDLNIHNILLDPASGR
HHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCE
FFLIDFDKCGISQANDWKTENLARLLRSFKKEQTRLNIRFNEQNWQALLAGYHK
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCCC
>Mature Secondary Structure
MIFYHFNRTVVPDTQTSLIKTLFGCKNFADSGRLLGSSKGRGTTWFLNTQAELGVNTVLR
CEEEEECCEECCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEECCHHCCHHHHHH
HYYRGGLFGKIVKDQYLFNGLENTRAFQEFSLLEKLHEWHLPVPQPIALKVEKTCCWYRA
HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHH
DIMLEKIEGTQDLSKYLQTNALSDTQYQQIGKLIRQLHDHQVHHSDLNIHNILLDPASGR
HHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCE
FFLIDFDKCGISQANDWKTENLARLLRSFKKEQTRLNIRFNEQNWQALLAGYHK
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA