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The map label for this gene is raiA [H]

Identifier: 126208377

GI number: 126208377

Start: 1044565

End: 1044879

Strand: Direct

Name: raiA [H]

Synonym: APL_0901

Alternate gene names: 126208377

Gene position: 1044565-1044879 (Clockwise)

Preceding gene: 126208374

Following gene: 126208380

Centisome position: 45.93

GC content: 35.87

Gene sequence:

>315_bases
ATGACAATCAATATTTCAAGCAAACAAATGGATGTAACCCCTGCAATTCGTACTCATATTGAAGAACGCTTAGCGAAACT
CGAAAAATGGCAAACTCAGTTAATCAATCCGCATTTTATGATCCATAAATTGCCGAATAGTTATGAAGTTGAAGCGTCTA
TCGGTACCCCGGTCGGAGAACTTTTTGCGAAGGCAAATAACGAAGATTTATATTTAGCGATTAATGAAGTCGAAACCAAA
CTCGAAACGCAATTAAATAAATTAGTACATAAAAATGAAGCGCGTCGTACGGACAGTACTTTAAAAAACGTTTAA

Upstream 100 bases:

>100_bases
CAAATTTTTAAATTTTGCTTCGGTTTTTGACTTGATATTTTGGAGTAAAAGTCATATTTTGAAATCAACTTAATAACCCC
TTCACAAAGAGGAAAATGCT

Downstream 100 bases:

>100_bases
AAAATTAAATAACAATTGAAGATAAAGCCAAATCGAATTTCGGTTTGGCTTTTTTAATTTAATTATCCGCCAGAAATAAC
GGACCTAATGCGGTTTTAGG

Product: ribosome-associated inhibitor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MTINISSKQMDVTPAIRTHIEERLAKLEKWQTQLINPHFMIHKLPNSYEVEASIGTPVGELFAKANNEDLYLAINEVETK
LETQLNKLVHKNEARRTDSTLKNV

Sequences:

>Translated_104_residues
MTINISSKQMDVTPAIRTHIEERLAKLEKWQTQLINPHFMIHKLPNSYEVEASIGTPVGELFAKANNEDLYLAINEVETK
LETQLNKLVHKNEARRTDSTLKNV
>Mature_103_residues
TINISSKQMDVTPAIRTHIEERLAKLEKWQTQLINPHFMIHKLPNSYEVEASIGTPVGELFAKANNEDLYLAINEVETKL
ETQLNKLVHKNEARRTDSTLKNV

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=104, Percent_Identity=57.6923076923077, Blast_Score=128, Evalue=6e-32,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 11941; Mature: 11810

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTINISSKQMDVTPAIRTHIEERLAKLEKWQTQLINPHFMIHKLPNSYEVEASIGTPVGE
CEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCHHH
LFAKANNEDLYLAINEVETKLETQLNKLVHKNEARRTDSTLKNV
HHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TINISSKQMDVTPAIRTHIEERLAKLEKWQTQLINPHFMIHKLPNSYEVEASIGTPVGE
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCHHH
LFAKANNEDLYLAINEVETKLETQLNKLVHKNEARRTDSTLKNV
HHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]