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The map label for this gene is ydgA [H]

Identifier: 126208365

GI number: 126208365

Start: 1029866

End: 1031281

Strand: Direct

Name: ydgA [H]

Synonym: APL_0889

Alternate gene names: 126208365

Gene position: 1029866-1031281 (Clockwise)

Preceding gene: 126208364

Following gene: 126208368

Centisome position: 45.28

GC content: 40.68

Gene sequence:

>1416_bases
ATGAAAAAATCAACAATGGCATTATCCGCGATTGCGGTATTAGCCGCCGTGACGACCGGCGGTGCATGGTACACCGGTAA
TCAAATCGAACAACGTTATCCTGCCTTACTTGAGCAACTTAACGGCAGCTTAAAAGGTTTAAATCTTTACGGCGTAAACG
CCGAGATTAGTGAGGTGAAACTAACTAAAGGCGTTTTTAGTTCCGACGTTCAATATAACGTGAATATTAAAGACGGAGAA
AAAACCTTTACGTTTAAAGGTAACGATAAAGTTTATCACGGTCCTATCCCGCTAAACCGCTTATTAAAAGGTAATCTAAT
GCCAATGTTATTAAGCGGCGAATCTCGTCTTTCCGCGGTTGATGAGAATATCAAAACCTATTTTGTCAATCATGAAATTT
TGGTTGCGACAACGGATGTAAATTACGCCGGTGAAGTCGCCGGTAACGCGACGCTGAATCCGGTCAAATCCAAAACCGTC
GAAACCTCAAAAATTCATTTTGAAGGCGACTATACCGGTTTCGGTAAACAGAAACTCAATGCGGATTTTATTAAAATCAA
AAGTCAGGAAAATGACGAAAAAATTGAAATTACCGATTTAAATTATGATGCCGACTATATTAAAGATACGAAATATCCCG
AATTAAAAGGCATCGGCGATTACCAAATTTCATTTAAAAAACTTGCCTTTGCTAACGATAAAAATCGGATTGTAAACCTC
AATGAGTTTACCTCTAAAGGTACCAGTAAAATAGCCGACGATCGTATGCTAAGCAGCGGTAATTTTTCGATTAAAACGGA
TTGGTCCGAAGGTAACAAAACTGCGGATTTAGGTAAATTCCAAGCGGATATCGCAATGGATATGGATGCCAAATCGTTTA
ATGAATTAATGTTACTGTCGGATAAATTGGAGAACGAATCGCCGGAGGTAGAACAACAGGTTCAATCGGCCGTAATGGCA
TTGGTAAGCCAAGCACCGAAATTAAAAATCAGTGAGCTTTCGCTTGAAAACGCTAAAGGTAAAAACACCTTCAACCTTAA
CTTGGATTTGGATAAATTTGATATCGCCCAACTGTCACAAGCGGGCTCTATTCAAGAGATATTGAAAATCTTTAAGCCGT
CCCATTTAAACCTCAATTTAAATCTTGCGGCAAGTGAAGAATTTGCAACCAAATGGCTATCCGTTTCAGCGGAAGATTAC
GTCAGCACGCCGGAAGAGAATGCAAAACTGCTGGTACAAGAATTGACGAACACCGCACAACAATCTGCTTTGGCAACCGT
TGATGCCGAGAGTATTAAAACCGCGCTGCGCATTGAAAACGGCAAAGTGATTTTAAACGGCAGAGAGGTTTCGGAATCGG
AATTGCAAATGGCACTATTCGCCATTATGTTCGGCGTCGGTCGCTTAGGTCAGTAA

Upstream 100 bases:

>100_bases
CGAACAATAAGATACTTGACTAAAAAACCGGACTTTTACAATCGTCCGGTTTTTTATTAGAATCTAGCTATCGTTCCGCG
CTTTCTTTAAGGATTCTATA

Downstream 100 bases:

>100_bases
CAACTGAAAAGCCATAAACAAGCGGTCTGTTTTAGGAAAGTATTTGCAAAATATTTCACAAAACAGACCACTTGCTTTTG
TCTTAAAGCCACTGATATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MKKSTMALSAIAVLAAVTTGGAWYTGNQIEQRYPALLEQLNGSLKGLNLYGVNAEISEVKLTKGVFSSDVQYNVNIKDGE
KTFTFKGNDKVYHGPIPLNRLLKGNLMPMLLSGESRLSAVDENIKTYFVNHEILVATTDVNYAGEVAGNATLNPVKSKTV
ETSKIHFEGDYTGFGKQKLNADFIKIKSQENDEKIEITDLNYDADYIKDTKYPELKGIGDYQISFKKLAFANDKNRIVNL
NEFTSKGTSKIADDRMLSSGNFSIKTDWSEGNKTADLGKFQADIAMDMDAKSFNELMLLSDKLENESPEVEQQVQSAVMA
LVSQAPKLKISELSLENAKGKNTFNLNLDLDKFDIAQLSQAGSIQEILKIFKPSHLNLNLNLAASEEFATKWLSVSAEDY
VSTPEENAKLLVQELTNTAQQSALATVDAESIKTALRIENGKVILNGREVSESELQMALFAIMFGVGRLGQ

Sequences:

>Translated_471_residues
MKKSTMALSAIAVLAAVTTGGAWYTGNQIEQRYPALLEQLNGSLKGLNLYGVNAEISEVKLTKGVFSSDVQYNVNIKDGE
KTFTFKGNDKVYHGPIPLNRLLKGNLMPMLLSGESRLSAVDENIKTYFVNHEILVATTDVNYAGEVAGNATLNPVKSKTV
ETSKIHFEGDYTGFGKQKLNADFIKIKSQENDEKIEITDLNYDADYIKDTKYPELKGIGDYQISFKKLAFANDKNRIVNL
NEFTSKGTSKIADDRMLSSGNFSIKTDWSEGNKTADLGKFQADIAMDMDAKSFNELMLLSDKLENESPEVEQQVQSAVMA
LVSQAPKLKISELSLENAKGKNTFNLNLDLDKFDIAQLSQAGSIQEILKIFKPSHLNLNLNLAASEEFATKWLSVSAEDY
VSTPEENAKLLVQELTNTAQQSALATVDAESIKTALRIENGKVILNGREVSESELQMALFAIMFGVGRLGQ
>Mature_471_residues
MKKSTMALSAIAVLAAVTTGGAWYTGNQIEQRYPALLEQLNGSLKGLNLYGVNAEISEVKLTKGVFSSDVQYNVNIKDGE
KTFTFKGNDKVYHGPIPLNRLLKGNLMPMLLSGESRLSAVDENIKTYFVNHEILVATTDVNYAGEVAGNATLNPVKSKTV
ETSKIHFEGDYTGFGKQKLNADFIKIKSQENDEKIEITDLNYDADYIKDTKYPELKGIGDYQISFKKLAFANDKNRIVNL
NEFTSKGTSKIADDRMLSSGNFSIKTDWSEGNKTADLGKFQADIAMDMDAKSFNELMLLSDKLENESPEVEQQVQSAVMA
LVSQAPKLKISELSLENAKGKNTFNLNLDLDKFDIAQLSQAGSIQEILKIFKPSHLNLNLNLAASEEFATKWLSVSAEDY
VSTPEENAKLLVQELTNTAQQSALATVDAESIKTALRIENGKVILNGREVSESELQMALFAIMFGVGRLGQ

Specific function: Unknown

COG id: COG5339

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side. Note=Has been isolated in association with the inner membrane, suggesting it may be tethered to the membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yihF and H.influenzae HI_1236 [H]

Homologues:

Organism=Escherichia coli, GI1787900, Length=515, Percent_Identity=25.631067961165, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082339, Length=484, Percent_Identity=24.3801652892562, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010352 [H]

Pfam domain/function: PF06097 DUF945 [H]

EC number: NA

Molecular weight: Translated: 51880; Mature: 51880

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSTMALSAIAVLAAVTTGGAWYTGNQIEQRYPALLEQLNGSLKGLNLYGVNAEISEVK
CCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHEE
LTKGVFSSDVQYNVNIKDGEKTFTFKGNDKVYHGPIPLNRLLKGNLMPMLLSGESRLSAV
EECCCCCCCCEEEEEEECCCEEEEEECCCEEEECCCCHHHHHCCCCCEEEECCCHHHHHH
DENIKTYFVNHEILVATTDVNYAGEVAGNATLNPVKSKTVETSKIHFEGDYTGFGKQKLN
HCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
ADFIKIKSQENDEKIEITDLNYDADYIKDTKYPELKGIGDYQISFKKLAFANDKNRIVNL
CEEEEEECCCCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEE
NEFTSKGTSKIADDRMLSSGNFSIKTDWSEGNKTADLGKFQADIAMDMDAKSFNELMLLS
HHHHCCCCCHHHHCCEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHEEH
DKLENESPEVEQQVQSAVMALVSQAPKLKISELSLENAKGKNTFNLNLDLDKFDIAQLSQ
HHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHHHHHC
AGSIQEILKIFKPSHLNLNLNLAASEEFATKWLSVSAEDYVSTPEENAKLLVQELTNTAQ
CCCHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHH
QSALATVDAESIKTALRIENGKVILNGREVSESELQMALFAIMFGVGRLGQ
HHHEEEECHHHHHEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKSTMALSAIAVLAAVTTGGAWYTGNQIEQRYPALLEQLNGSLKGLNLYGVNAEISEVK
CCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHEE
LTKGVFSSDVQYNVNIKDGEKTFTFKGNDKVYHGPIPLNRLLKGNLMPMLLSGESRLSAV
EECCCCCCCCEEEEEEECCCEEEEEECCCEEEECCCCHHHHHCCCCCEEEECCCHHHHHH
DENIKTYFVNHEILVATTDVNYAGEVAGNATLNPVKSKTVETSKIHFEGDYTGFGKQKLN
HCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
ADFIKIKSQENDEKIEITDLNYDADYIKDTKYPELKGIGDYQISFKKLAFANDKNRIVNL
CEEEEEECCCCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEE
NEFTSKGTSKIADDRMLSSGNFSIKTDWSEGNKTADLGKFQADIAMDMDAKSFNELMLLS
HHHHCCCCCHHHHCCEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHEEH
DKLENESPEVEQQVQSAVMALVSQAPKLKISELSLENAKGKNTFNLNLDLDKFDIAQLSQ
HHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHHHHHC
AGSIQEILKIFKPSHLNLNLNLAASEEFATKWLSVSAEDYVSTPEENAKLLVQELTNTAQ
CCCHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHH
QSALATVDAESIKTALRIENGKVILNGREVSESELQMALFAIMFGVGRLGQ
HHHEEEECHHHHHEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]