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The map label for this gene is yliC [C]

Identifier: 126208325

GI number: 126208325

Start: 985086

End: 986039

Strand: Direct

Name: yliC [C]

Synonym: APL_0849

Alternate gene names: 126208325

Gene position: 985086-986039 (Clockwise)

Preceding gene: 126208324

Following gene: 126208326

Centisome position: 43.31

GC content: 44.34

Gene sequence:

>954_bases
ATGGAAATCATCCTTCGTCTTTTATTTCGTCGTCTAATGGCTCTACCGATTATGATTCTCGGAGTGACCGCCTTAGTCTT
TATTGTTTTGCAATTCACGCCCGGTGATCCGGCAACCGTCGCACTCGGCGAAAGTGCCAGTGAAGCGGCTAAAGAAATCT
ATCGAGAACAACACGGTTTGAATGATCCGGTAGTCGTGCAATATTTCCGCTTTCTCGGCAATTTATTCGTACTGGATTTC
GGTATGACTACGCCGCCGGAACAACCGATTATCGATATGATTGCCAAAGCATTCCCGCTTACCTTACAACTCACTTTTAT
CGGGGTATTTCTAGCGGCAATCGTTTCTTTCTCGTTAGGTATTCTTGCCGCGCTTTATCGTGATCGTTGGGTGGACCAAG
TGATTCGTTTAATTTCGGTCGCTGCGGTTGCAACACCGTCTTTTTGGCTTGGTATCTTACTGATTCAATACTTTTCCTTA
AAACTGGATTGGCTACCGTCAGGCGGTTTTGTACCGTTTAGCGAAGATCCGAATGAATATTTTCGTTCGATGATTTTACC
GTCACTTGCACTTGCCGTGCCGGTTTGCGCCTCATTAATTCGTGTTGTACGTACCACAATGGTGGAAGAAATGGATAAAG
ATTATGTGCGTACCGCCATCGGTAACGGTGTGCCTTATTCAACCGTGATTCGTCACAATGTCTTACGTAACGCCTTAATC
ACTCCGGTAACCGTCCTTGGTTTACGAGTCGGCTATTTACTCGGCGGAGCAGTGGTTATCGAACAAATCTTTGATTTACC
GGGTATGGGTAAACTTATCTTTAACGGTATCGTGAACCACGACTTACACTTAGTGCAAGGTGTGGTGCTTACTATCGCCT
TTACCTTCGTATTAGTTAATATCATTGTCGATATTCTCTATTTGCTCATCAATCCAAAAATTCGGAGTCTATAA

Upstream 100 bases:

>100_bases
AACCTCTAATAAAATGCCCTTTGTCGTCCAAAGGCAAAGGGTATTACTTAATATAACTCTCTTAATTAAATCTTTACCCT
TCAAAAATGAGGGAGGCTCA

Downstream 100 bases:

>100_bases
TGTTTCGTCAAGGATTAGCCGCTCGACTAGCTAACGGTGGCGCTAGATTTAGAGCATTATCAACCAGTTCAAAAATTGCA
TTGATTTTCATTTTATTTGT

Product: inner membrane ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MEIILRLLFRRLMALPIMILGVTALVFIVLQFTPGDPATVALGESASEAAKEIYREQHGLNDPVVVQYFRFLGNLFVLDF
GMTTPPEQPIIDMIAKAFPLTLQLTFIGVFLAAIVSFSLGILAALYRDRWVDQVIRLISVAAVATPSFWLGILLIQYFSL
KLDWLPSGGFVPFSEDPNEYFRSMILPSLALAVPVCASLIRVVRTTMVEEMDKDYVRTAIGNGVPYSTVIRHNVLRNALI
TPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNGIVNHDLHLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL

Sequences:

>Translated_317_residues
MEIILRLLFRRLMALPIMILGVTALVFIVLQFTPGDPATVALGESASEAAKEIYREQHGLNDPVVVQYFRFLGNLFVLDF
GMTTPPEQPIIDMIAKAFPLTLQLTFIGVFLAAIVSFSLGILAALYRDRWVDQVIRLISVAAVATPSFWLGILLIQYFSL
KLDWLPSGGFVPFSEDPNEYFRSMILPSLALAVPVCASLIRVVRTTMVEEMDKDYVRTAIGNGVPYSTVIRHNVLRNALI
TPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNGIVNHDLHLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL
>Mature_317_residues
MEIILRLLFRRLMALPIMILGVTALVFIVLQFTPGDPATVALGESASEAAKEIYREQHGLNDPVVVQYFRFLGNLFVLDF
GMTTPPEQPIIDMIAKAFPLTLQLTFIGVFLAAIVSFSLGILAALYRDRWVDQVIRLISVAAVATPSFWLGILLIQYFSL
KLDWLPSGGFVPFSEDPNEYFRSMILPSLALAVPVCASLIRVVRTTMVEEMDKDYVRTAIGNGVPYSTVIRHNVLRNALI
TPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNGIVNHDLHLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=312, Percent_Identity=37.5, Blast_Score=224, Evalue=7e-60,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=36.1702127659575, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=33.3333333333333, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1787497, Length=316, Percent_Identity=33.8607594936709, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=31.3609467455621, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=31.3207547169811, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788504, Length=359, Percent_Identity=24.7910863509749, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35113; Mature: 35113

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIILRLLFRRLMALPIMILGVTALVFIVLQFTPGDPATVALGESASEAAKEIYREQHGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCC
NDPVVVQYFRFLGNLFVLDFGMTTPPEQPIIDMIAKAFPLTLQLTFIGVFLAAIVSFSLG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILAALYRDRWVDQVIRLISVAAVATPSFWLGILLIQYFSLKLDWLPSGGFVPFSEDPNEY
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHH
FRSMILPSLALAVPVCASLIRVVRTTMVEEMDKDYVRTAIGNGVPYSTVIRHNVLRNALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNGIVNHDLHLVQGVVLTIAFTFVLVN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIVDILYLLINPKIRSL
HHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MEIILRLLFRRLMALPIMILGVTALVFIVLQFTPGDPATVALGESASEAAKEIYREQHGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCC
NDPVVVQYFRFLGNLFVLDFGMTTPPEQPIIDMIAKAFPLTLQLTFIGVFLAAIVSFSLG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILAALYRDRWVDQVIRLISVAAVATPSFWLGILLIQYFSLKLDWLPSGGFVPFSEDPNEY
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHH
FRSMILPSLALAVPVCASLIRVVRTTMVEEMDKDYVRTAIGNGVPYSTVIRHNVLRNALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNGIVNHDLHLVQGVVLTIAFTFVLVN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIVDILYLLINPKIRSL
HHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]