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The map label for this gene is yoaA [C]

Identifier: 126208259

GI number: 126208259

Start: 897087

End: 899009

Strand: Reverse

Name: yoaA [C]

Synonym: APL_0781

Alternate gene names: 126208259

Gene position: 899009-897087 (Counterclockwise)

Preceding gene: 126208260

Following gene: 126208258

Centisome position: 39.53

GC content: 43.11

Gene sequence:

>1923_bases
ATGAAATATGACGATAAAATTCTCCACGCTTTCAGTGAAGACGGCTTATTAAGTAGCAATATTCAAGGATTCCGCCCTCG
TGCGGCGCAACTTGAAATGGCACAAGCGGTCGGAAGAGCGGTAAAGTTTGCAACACCTGCAGTAGTAGAAGCCGGAACAG
GTACGGGTAAAACCTTTGCTTATTTAGTACCGGCATTGCTGTCCGGTAAAAAAACCATTGTTTCGACCGGTTCAAAGAAT
TTGCAAGATCAATTATTTAATCGAGATCTACCGACTATTCAGAACGCCTTGAAATATAAAGGTAAAGTTGCTTTATTAAA
AGGACGAGCAAATTACCTCTGCTTAGAACGTTTGGATCAAGTCGTAGCTATGGGCGTATTGGGGGATAAATCGGTGTTAG
CGGATTTATCGAAAGTCAGCAAATGGCATACTTCAACTAAAACCGGTGATTTAAGCGAATGTATTACAATCGCCGAAGAC
AGCCCGATTTTACCGCAATTGGTCAGCACTGCCGAAAGTTGCTTAGGTTCGGACTGTCCGCATTTTAAAGATTGTTATGT
GGTACAAGCCCGCCGCCGAGCGATGGAAGCGGATGTGGTGGTGGTCAATCATCATCTGTTTTGTGCCGATATGGCAGTCA
AAGAAACCGGTTTCGGTGAGCTAATTCCGGAAGCGGAACTGATCATTTTTGACGAAGCGCACCAATTGCCGGATATCGCC
AGCCAATATTTCGGTCAGTCACTAAGTTCTCGTCAGCTATTCGATATTTGTAAAGATACGAATATTGTGTACCGTACCGA
GCTAAAAGATCTTGCCCAATTAGGTAAAGCGGCGGATCACTTGCAAAAAACAGTGCAAGATTTTCGTTTGTTAATGGGAA
CGGAAGGCTCAATTCGAGGAAACTTGCGAGAGTTGTTTAACGACCAAAAAGTGGTGGGCGGCTTAACAAAAGTTTCGGAA
AACATTGATTTTTTAAGCGAAGTGATTAAAAAATCGCTCGGTCGTTCGGAAACGCTCGATAAAATTTTCGAAAGATTGGC
GGAAGTCAAAGTTCAGTTAAAAAAATTGAGCGATACTAGTGTGGTTGGTTATTGCTATTGGTATGAAGCCAACGGCCGTT
CTTTCGGTTTACATATCACACCTTTAACCGTGGCGGATAAATTCGGCGAACAACTTAAAAATCAGCAGATTGGTTGGGTA
TTTACTTCAGCAACGTTAGAGGTCGGCGGCAAATTTGATCACTTTTGTCAGCGTTTAGGCATTGAGAATGCGGAACAATT
GGTGCTGCAAAGCCCTTTTGATTACGCAAATCAATCGCTACTTTGTGTGCCTCGTTATTTGCCGGATACCAATAAATTGC
ACACTTTAAACGAACTAGGCAAAATGTTGATGCCCGTTATTGAAGCCAATAACGGTCGTTGCTTTTTGCTCTGTACTTCC
TATTTTATGATGCGTGGGTTAGCGGATTTTCTGCGTGAACACAGCAATTTAAGCGTGTTATTGCAAGGGGAAACCAGCAA
AGCCCGCTTATTGGAAAAATTTATTGCGGAAGAAAACAGCGTACTGGTTGCAACTCAAAGTTTCTGGGAAGGCATTGATG
TGCGCGGCGATGCGTTATCGCTGGTGATTATTGATAAATTGCCGTTTACTTCGCCTGACGAGCCGTTGTTAAGAGCGCGT
ATGGAAGATTGTCGTTTACAAGGCGGCGAGCCGTTTAACGATATTCAAATTCCGGAAGCGGTGATTACGCTCAAACAGGG
CGTAGGGCGATTGATTCGTGACGTAACCGATCGAGGTGTGGTGATCATTTGTGATTCACGTTTGGTAATGCGCAATTACG
GTAAGACGTTCTTAAAAAGTTTACCGCCATCAACACGCACTCGTGATTTAGATAAAGTGATTCAATTTTTAAAAAATAAG
TGA

Upstream 100 bases:

>100_bases
AAAAGTTCACTTTACACAAAAGATTTACTTTTAAATAGTTTGGAATAACTAAAATATAACACATTGAAAATAATTTACAA
ATAAATAACAAATATGAAAT

Downstream 100 bases:

>100_bases
GAAAACAAGCGGTTGATTTTGCAAAATTTTTTGTAAATTTAACCGCTTATTACGGAGGATACTTATATGATTGTTCGTAT
GCTCAGAATGCTGATTTCCT

Product: putative ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 640; Mature: 640

Protein sequence:

>640_residues
MKYDDKILHAFSEDGLLSSNIQGFRPRAAQLEMAQAVGRAVKFATPAVVEAGTGTGKTFAYLVPALLSGKKTIVSTGSKN
LQDQLFNRDLPTIQNALKYKGKVALLKGRANYLCLERLDQVVAMGVLGDKSVLADLSKVSKWHTSTKTGDLSECITIAED
SPILPQLVSTAESCLGSDCPHFKDCYVVQARRRAMEADVVVVNHHLFCADMAVKETGFGELIPEAELIIFDEAHQLPDIA
SQYFGQSLSSRQLFDICKDTNIVYRTELKDLAQLGKAADHLQKTVQDFRLLMGTEGSIRGNLRELFNDQKVVGGLTKVSE
NIDFLSEVIKKSLGRSETLDKIFERLAEVKVQLKKLSDTSVVGYCYWYEANGRSFGLHITPLTVADKFGEQLKNQQIGWV
FTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYANQSLLCVPRYLPDTNKLHTLNELGKMLMPVIEANNGRCFLLCTS
YFMMRGLADFLREHSNLSVLLQGETSKARLLEKFIAEENSVLVATQSFWEGIDVRGDALSLVIIDKLPFTSPDEPLLRAR
MEDCRLQGGEPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGKTFLKSLPPSTRTRDLDKVIQFLKNK

Sequences:

>Translated_640_residues
MKYDDKILHAFSEDGLLSSNIQGFRPRAAQLEMAQAVGRAVKFATPAVVEAGTGTGKTFAYLVPALLSGKKTIVSTGSKN
LQDQLFNRDLPTIQNALKYKGKVALLKGRANYLCLERLDQVVAMGVLGDKSVLADLSKVSKWHTSTKTGDLSECITIAED
SPILPQLVSTAESCLGSDCPHFKDCYVVQARRRAMEADVVVVNHHLFCADMAVKETGFGELIPEAELIIFDEAHQLPDIA
SQYFGQSLSSRQLFDICKDTNIVYRTELKDLAQLGKAADHLQKTVQDFRLLMGTEGSIRGNLRELFNDQKVVGGLTKVSE
NIDFLSEVIKKSLGRSETLDKIFERLAEVKVQLKKLSDTSVVGYCYWYEANGRSFGLHITPLTVADKFGEQLKNQQIGWV
FTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYANQSLLCVPRYLPDTNKLHTLNELGKMLMPVIEANNGRCFLLCTS
YFMMRGLADFLREHSNLSVLLQGETSKARLLEKFIAEENSVLVATQSFWEGIDVRGDALSLVIIDKLPFTSPDEPLLRAR
MEDCRLQGGEPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGKTFLKSLPPSTRTRDLDKVIQFLKNK
>Mature_640_residues
MKYDDKILHAFSEDGLLSSNIQGFRPRAAQLEMAQAVGRAVKFATPAVVEAGTGTGKTFAYLVPALLSGKKTIVSTGSKN
LQDQLFNRDLPTIQNALKYKGKVALLKGRANYLCLERLDQVVAMGVLGDKSVLADLSKVSKWHTSTKTGDLSECITIAED
SPILPQLVSTAESCLGSDCPHFKDCYVVQARRRAMEADVVVVNHHLFCADMAVKETGFGELIPEAELIIFDEAHQLPDIA
SQYFGQSLSSRQLFDICKDTNIVYRTELKDLAQLGKAADHLQKTVQDFRLLMGTEGSIRGNLRELFNDQKVVGGLTKVSE
NIDFLSEVIKKSLGRSETLDKIFERLAEVKVQLKKLSDTSVVGYCYWYEANGRSFGLHITPLTVADKFGEQLKNQQIGWV
FTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYANQSLLCVPRYLPDTNKLHTLNELGKMLMPVIEANNGRCFLLCTS
YFMMRGLADFLREHSNLSVLLQGETSKARLLEKFIAEENSVLVATQSFWEGIDVRGDALSLVIIDKLPFTSPDEPLLRAR
MEDCRLQGGEPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGKTFLKSLPPSTRTRDLDKVIQFLKNK

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=627, Percent_Identity=60.2870813397129, Blast_Score=791, Evalue=0.0,
Organism=Escherichia coli, GI1787018, Length=685, Percent_Identity=27.4452554744526, Blast_Score=176, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650
- InterPro:   IPR006935 [H]

Pfam domain/function: PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 71294; Mature: 71294

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYDDKILHAFSEDGLLSSNIQGFRPRAAQLEMAQAVGRAVKFATPAVVEAGTGTGKTFA
CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCHHH
YLVPALLSGKKTIVSTGSKNLQDQLFNRDLPTIQNALKYKGKVALLKGRANYLCLERLDQ
HHHHHHHCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
VVAMGVLGDKSVLADLSKVSKWHTSTKTGDLSECITIAEDSPILPQLVSTAESCLGSDCP
HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCCHHHHHHHHHHHHCCCCC
HFKDCYVVQARRRAMEADVVVVNHHLFCADMAVKETGFGELIPEAELIIFDEAHQLPDIA
CCHHHHHHHHHHHHHHCCEEEEECEEEEHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHH
SQYFGQSLSSRQLFDICKDTNIVYRTELKDLAQLGKAADHLQKTVQDFRLLMGTEGSIRG
HHHHCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
NLRELFNDQKVVGGLTKVSENIDFLSEVIKKSLGRSETLDKIFERLAEVKVQLKKLSDTS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
VVGYCYWYEANGRSFGLHITPLTVADKFGEQLKNQQIGWVFTSATLEVGGKFDHFCQRLG
EEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCHHHHHHHHC
IENAEQLVLQSPFDYANQSLLCVPRYLPDTNKLHTLNELGKMLMPVIEANNGRCFLLCTS
CCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
YFMMRGLADFLREHSNLSVLLQGETSKARLLEKFIAEENSVLVATQSFWEGIDVRGDALS
HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCEEE
LVIIDKLPFTSPDEPLLRARMEDCRLQGGEPFNDIQIPEAVITLKQGVGRLIRDVTDRGV
EEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
VIICDSRLVMRNYGKTFLKSLPPSTRTRDLDKVIQFLKNK
EEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKYDDKILHAFSEDGLLSSNIQGFRPRAAQLEMAQAVGRAVKFATPAVVEAGTGTGKTFA
CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCHHH
YLVPALLSGKKTIVSTGSKNLQDQLFNRDLPTIQNALKYKGKVALLKGRANYLCLERLDQ
HHHHHHHCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
VVAMGVLGDKSVLADLSKVSKWHTSTKTGDLSECITIAEDSPILPQLVSTAESCLGSDCP
HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHEECCCCCCHHHHHHHHHHHHCCCCC
HFKDCYVVQARRRAMEADVVVVNHHLFCADMAVKETGFGELIPEAELIIFDEAHQLPDIA
CCHHHHHHHHHHHHHHCCEEEEECEEEEHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHH
SQYFGQSLSSRQLFDICKDTNIVYRTELKDLAQLGKAADHLQKTVQDFRLLMGTEGSIRG
HHHHCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
NLRELFNDQKVVGGLTKVSENIDFLSEVIKKSLGRSETLDKIFERLAEVKVQLKKLSDTS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
VVGYCYWYEANGRSFGLHITPLTVADKFGEQLKNQQIGWVFTSATLEVGGKFDHFCQRLG
EEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCHHHHHHHHC
IENAEQLVLQSPFDYANQSLLCVPRYLPDTNKLHTLNELGKMLMPVIEANNGRCFLLCTS
CCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
YFMMRGLADFLREHSNLSVLLQGETSKARLLEKFIAEENSVLVATQSFWEGIDVRGDALS
HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCEEE
LVIIDKLPFTSPDEPLLRARMEDCRLQGGEPFNDIQIPEAVITLKQGVGRLIRDVTDRGV
EEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
VIICDSRLVMRNYGKTFLKSLPPSTRTRDLDKVIQFLKNK
EEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]