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The map label for this gene is yhjC [C]

Identifier: 126208177

GI number: 126208177

Start: 798742

End: 799638

Strand: Direct

Name: yhjC [C]

Synonym: APL_0697

Alternate gene names: 126208177

Gene position: 798742-799638 (Clockwise)

Preceding gene: 126208175

Following gene: 126208189

Centisome position: 35.12

GC content: 40.36

Gene sequence:

>897_bases
ATGGATAAGCTCAATGCGATTAATCTTTTCTGTCGTGTAATCGAAACACAAAGTTTTACTCAAGCGGCACAACTTGAACA
GATCTCGTTAGCAATGGCAAGTAAGCTGATTGCCCAACTTGAAGAACATCTTAACGTACGACTGTTACACCGTACTACTC
GTAAGATCACACCGACTGAAGCCGGTTTACTTTATTATCAACGCTGTTTACCGATTCTTAACGAATTAAAAGATGCGGAG
AATAGTGTAAGCAATATTACCTCGACATTACAAGGGAAAATCACAATTTCTCTGCCGATGGACTTCGGTTCGCGTTTTGT
TGCGCCTTATTTAGGTCAATTTATGACGACTTATCCGAATATTCAGCTCAATATTGAGTTTAGTGATCGTCGTGTCGATG
TTGTGGCGGAAGGTTATGATTTGGTATTACGTATCGGTGCACTTGAAGACAGCTCTATCGTCGCAAAACGTATTGCCCGT
TCGGAACTCGTACTGCTTGCCTCGCCGGAATATTTAGCAAAACACGGTACGCCGGAAAATTTAGCACAATTAACCGAACA
TACGTGCTTAATCTACGAAAATCATCAGCAATGGCAATTTACGGACGGCGACCAAAAAGTGAAAATAAAACCGAATGCGC
ACGTCATTTCCAATAACGGTTATGCGCTATTACAGATGACCAAAGCGGAACAGGGTATCGTTAATTTACCGCTGTTTCTA
GCCAAAGAAGAAATAAGTGCCGGTAAATTGGTGGAAATTTTACCTCAATATAAACAACATTCGATCGATATTAGTATTTT
ATATCCGCACCGCCGTTACTTATCGCCCAAAGTAAAAGTGCTGATTGAATTTTTGGCAACTCTTATGCAAGAGCGTCATC
AATATTTAGTGAAATAA

Upstream 100 bases:

>100_bases
GATTTTATTTCTTTTTAGTTGATATTTAATACTACTTGACCCAAAATGCACCGACAATAGCAAGCCTAATGATAAAAAAC
AATATCTAGAGAGATAAAAA

Downstream 100 bases:

>100_bases
GTAATAAACGGTTTGATTTTCTATTTTTTGAAAAAACAAAACGCCTTTCTTTTAAGGAAAGGCGTTTGCGAATATTCAAT
AAAATCCAACCGCTTACTGT

Product: putative HTH-type transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLLYYQRCLPILNELKDAE
NSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLNIEFSDRRVDVVAEGYDLVLRIGALEDSSIVAKRIAR
SELVLLASPEYLAKHGTPENLAQLTEHTCLIYENHQQWQFTDGDQKVKIKPNAHVISNNGYALLQMTKAEQGIVNLPLFL
AKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFLATLMQERHQYLVK

Sequences:

>Translated_298_residues
MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLLYYQRCLPILNELKDAE
NSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLNIEFSDRRVDVVAEGYDLVLRIGALEDSSIVAKRIAR
SELVLLASPEYLAKHGTPENLAQLTEHTCLIYENHQQWQFTDGDQKVKIKPNAHVISNNGYALLQMTKAEQGIVNLPLFL
AKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFLATLMQERHQYLVK
>Mature_298_residues
MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTEAGLLYYQRCLPILNELKDAE
NSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPNIQLNIEFSDRRVDVVAEGYDLVLRIGALEDSSIVAKRIAR
SELVLLASPEYLAKHGTPENLAQLTEHTCLIYENHQQWQFTDGDQKVKIKPNAHVISNNGYALLQMTKAEQGIVNLPLFL
AKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFLATLMQERHQYLVK

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=32.5503355704698, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1789639, Length=303, Percent_Identity=31.023102310231, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=34.0136054421769, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=31.3793103448276, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=29.8245614035088, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=26.7605633802817, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=26.6211604095563, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1789173, Length=252, Percent_Identity=28.1746031746032, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1786448, Length=286, Percent_Identity=25.5244755244755, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=33.59375, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790011, Length=311, Percent_Identity=21.2218649517685, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=113, Percent_Identity=33.6283185840708, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788706, Length=205, Percent_Identity=26.3414634146341, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33890; Mature: 33890

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTE
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHCCCCCCH
AGLLYYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCC
IQLNIEFSDRRVDVVAEGYDLVLRIGALEDSSIVAKRIARSELVLLASPEYLAKHGTPEN
EEEEEEECCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCEEEEECCHHHHHCCCHHH
LAQLTEHTCLIYENHQQWQFTDGDQKVKIKPNAHVISNNGYALLQMTKAEQGIVNLPLFL
HHHHHHCEEEEEECCCEEEEECCCCEEEECCCEEEEECCCEEEEEEECCCCCCCCCCCEE
AKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFLATLMQERHQYLVK
ECCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKLNAINLFCRVIETQSFTQAAQLEQISLAMASKLIAQLEEHLNVRLLHRTTRKITPTE
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHCCCCCCH
AGLLYYQRCLPILNELKDAENSVSNITSTLQGKITISLPMDFGSRFVAPYLGQFMTTYPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCC
IQLNIEFSDRRVDVVAEGYDLVLRIGALEDSSIVAKRIARSELVLLASPEYLAKHGTPEN
EEEEEEECCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCEEEEECCHHHHHCCCHHH
LAQLTEHTCLIYENHQQWQFTDGDQKVKIKPNAHVISNNGYALLQMTKAEQGIVNLPLFL
HHHHHHCEEEEEECCCEEEEECCCCEEEECCCEEEEECCCEEEEEEECCCCCCCCCCCEE
AKEEISAGKLVEILPQYKQHSIDISILYPHRRYLSPKVKVLIEFLATLMQERHQYLVK
ECCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]