Click here to switch to the map view.

The map label for this gene is ygdD [C]

Identifier: 126208166

GI number: 126208166

Start: 784609

End: 785013

Strand: Reverse

Name: ygdD [C]

Synonym: APL_0686

Alternate gene names: 126208166

Gene position: 785013-784609 (Counterclockwise)

Preceding gene: 126208168

Following gene: 126208165

Centisome position: 34.51

GC content: 40.0

Gene sequence:

>405_bases
ATGAAAAACAAATTTATCTTATTTGCAGCAATTAGCGGCTTTTTCTGTATTGCTTTCGGTGCTTTCGCTTCACACGGATT
GGCAAAAACATTAGATGCAAAGGCGTTAGGTTGGATTGATACCGGTCTTCAATACCAAATGTTTCACACCTTAGCTTTAC
TGGCTTTAGGTTTGTTCCAATTAGTAAATGCCGCACAAAATCCGCCCGCTTGCAGAGCAAAAGCCTTAAACATTATCGGC
GGTAGTTGGATATTAGGCATTTTGTTATTTAGCGGTAGCTTATATGCGTTAGCATTATTAGGACAACGATTATTTGTGTG
GAGTACACCGCTTGGCGGCGTATTTTTTATGATCGGTTGGGCGGCATTAATTTTTGTGAGTTTACGTGCTAAAAAAACCG
CCTAA

Upstream 100 bases:

>100_bases
AAGCCTCCTTAGTATAAAATTAACAAAATCATAACAAAAGATGGCTAAATGTGTAATAAATTTTATGCTATATTTAGCAT
TATTTTTTTAAGGAGAAACG

Downstream 100 bases:

>100_bases
TCAGTTAGAATAGGCGGAAAACATTGTTTTTGGTTTTATGGTGTCAGGTATTGACTTGCCAACGCAATCAAGGCTAGAAT
GATTCCGACATCAATTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKNKFILFAAISGFFCIAFGAFASHGLAKTLDAKALGWIDTGLQYQMFHTLALLALGLFQLVNAAQNPPACRAKALNIIG
GSWILGILLFSGSLYALALLGQRLFVWSTPLGGVFFMIGWAALIFVSLRAKKTA

Sequences:

>Translated_134_residues
MKNKFILFAAISGFFCIAFGAFASHGLAKTLDAKALGWIDTGLQYQMFHTLALLALGLFQLVNAAQNPPACRAKALNIIG
GSWILGILLFSGSLYALALLGQRLFVWSTPLGGVFFMIGWAALIFVSLRAKKTA
>Mature_134_residues
MKNKFILFAAISGFFCIAFGAFASHGLAKTLDAKALGWIDTGLQYQMFHTLALLALGLFQLVNAAQNPPACRAKALNIIG
GSWILGILLFSGSLYALALLGQRLFVWSTPLGGVFFMIGWAALIFVSLRAKKTA

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=133, Percent_Identity=45.8646616541353, Blast_Score=97, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14398; Mature: 14398

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKFILFAAISGFFCIAFGAFASHGLAKTLDAKALGWIDTGLQYQMFHTLALLALGLFQ
CCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LVNAAQNPPACRAKALNIIGGSWILGILLFSGSLYALALLGQRLFVWSTPLGGVFFMIGW
HHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHEEECCHHHHHHHHHH
AALIFVSLRAKKTA
HHHHHHHHHHHCCC
>Mature Secondary Structure
MKNKFILFAAISGFFCIAFGAFASHGLAKTLDAKALGWIDTGLQYQMFHTLALLALGLFQ
CCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LVNAAQNPPACRAKALNIIGGSWILGILLFSGSLYALALLGQRLFVWSTPLGGVFFMIGW
HHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHEEECCHHHHHHHHHH
AALIFVSLRAKKTA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]