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The map label for this gene is ycdO [C]

Identifier: 126208148

GI number: 126208148

Start: 763097

End: 763909

Strand: Direct

Name: ycdO [C]

Synonym: APL_0668

Alternate gene names: 126208148

Gene position: 763097-763909 (Clockwise)

Preceding gene: 126208142

Following gene: 126208149

Centisome position: 33.55

GC content: 40.84

Gene sequence:

>813_bases
ATGCGTTTAACAAAATTAGCCGTGCTACTTTCCGGTGTATTACTGACGACTCAATCTTTTGCATTAGACTTAAGCAAAGA
AACCGAAACTTATAAACAATTTGTGGTTGAGCAAATCGACCGCTTAGTTACCGACACCGAGAAATTTGTTGCTTATTTAG
ATAAAGGCGATGTGCAAAAAGCGAAACAAATTTACCCGCTTGCACGAATGTATTTTGAACGTTCCGAACCGATTGCCGAG
AGTTTTGGCGATTTGGATCCTCGTATTGACGCACGCCTTGCCGATTTAACCGAAGAAGGCAAAACGGAAAAAGATTGGTC
CGGCTTCCATAAAATCGAAAAAGTTTTATGGGAGAAAAATACTACTGAAGGCACAAAAGCGACTGCGGAACAACTGCTAA
AAGACGTTAAAGAGTTACGTGCGAAAATTCCGACGGCAGAAGTTACGCCTGAATTAATGATCACCGGTGCAGTAGATTTA
TTAAATGAAGTATCCACCACCAAAGTAACAGGTGAAGAAGAAATTTTCTCTAAAACCGACCTTTACGATTTTAAAGCCAA
CATTGAAGGGGCGGAAAAAATCTATGAAATCTTTAAACCGCAATTAGACAAAACCGATGCGAAACTTTCGGCGGAAATCG
CCGCTCGCTTTGCTACGGTCAATAGCTTACTGGCAAAACACAATAAAGCGAAAAACGGTTACGATTACGTAGCATATAAC
AAATTGTCAAAAAACGATGTTAAAGCATTAGCCGAGGCAGTAAACCAACTGGGCGAGCCGTTGGCGCAATTAGGCGTTCT
CTTAGAGAAATAA

Upstream 100 bases:

>100_bases
CTAAAATGTGAATCAGATCACAAAATTAATACTCTTGTTTTGATAATGATTATTAATAAGAATATGATTACCACACTATT
CTTAGATAGAGGAAATTTTT

Downstream 100 bases:

>100_bases
GGTAGGAATAAATGATGGCAGAAATCCGTTCTCGCCGTGATTTTCTAAAAAATACCGCATTGGTAGGAGCTGGCTTATTG
TCGGCTCCTGCTTTTGCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRLTKLAVLLSGVLLTTQSFALDLSKETETYKQFVVEQIDRLVTDTEKFVAYLDKGDVQKAKQIYPLARMYFERSEPIAE
SFGDLDPRIDARLADLTEEGKTEKDWSGFHKIEKVLWEKNTTEGTKATAEQLLKDVKELRAKIPTAEVTPELMITGAVDL
LNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKPQLDKTDAKLSAEIAARFATVNSLLAKHNKAKNGYDYVAYN
KLSKNDVKALAEAVNQLGEPLAQLGVLLEK

Sequences:

>Translated_270_residues
MRLTKLAVLLSGVLLTTQSFALDLSKETETYKQFVVEQIDRLVTDTEKFVAYLDKGDVQKAKQIYPLARMYFERSEPIAE
SFGDLDPRIDARLADLTEEGKTEKDWSGFHKIEKVLWEKNTTEGTKATAEQLLKDVKELRAKIPTAEVTPELMITGAVDL
LNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKPQLDKTDAKLSAEIAARFATVNSLLAKHNKAKNGYDYVAYN
KLSKNDVKALAEAVNQLGEPLAQLGVLLEK
>Mature_270_residues
MRLTKLAVLLSGVLLTTQSFALDLSKETETYKQFVVEQIDRLVTDTEKFVAYLDKGDVQKAKQIYPLARMYFERSEPIAE
SFGDLDPRIDARLADLTEEGKTEKDWSGFHKIEKVLWEKNTTEGTKATAEQLLKDVKELRAKIPTAEVTPELMITGAVDL
LNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKPQLDKTDAKLSAEIAARFATVNSLLAKHNKAKNGYDYVAYN
KLSKNDVKALAEAVNQLGEPLAQLGVLLEK

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=247, Percent_Identity=42.1052631578947, Blast_Score=189, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 30303; Mature: 30303

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA