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The map label for this gene is nlpC [C]

Identifier: 126208093

GI number: 126208093

Start: 697885

End: 698409

Strand: Direct

Name: nlpC [C]

Synonym: APL_0611

Alternate gene names: 126208093

Gene position: 697885-698409 (Clockwise)

Preceding gene: 126208092

Following gene: 126208098

Centisome position: 30.68

GC content: 43.43

Gene sequence:

>525_bases
ATGATTAAATTCAGTCAAAAATATTTACCGCTGGCGGCGGTTATGTCTTGTGCCGTATTATTAACCGCTTGTTCAAATGA
TATTAGCGTTTCAGGTCCGATTAAAGCGAGGGCGGGGATTTTTCGTACCCATCACAGCACTTTATCCGATCCGATAATGG
CGATTAGTAGCTTGAGCGAACAGCAACATGAATGGAAGGGAACACGCTATCGTTTAGGCGGTAACAGTAAGGCGGGTATT
GATTGTTCCGGCTTTATGCAAGTGACTTTCCGAGATTTATTCGGGATTGATTTGCCAAGAACGACTTCCGAGCAAGCGGA
AGAAGGAACACGAATCGACCGTGAAGAAATTAAAACTGGTGATTTGGTGTTTTTCAAAACCGGACGAGGACCTAACGGAA
AGCATGTCGGTGTGTACGTAAAAAACGGACAATTTTTACATGCTTCAACAAAAGGCGGGGTAATTTATTCGGATATGAAT
TCCCCGTATTGGTCGAGAACATTTTGGCAAGCACGCCGTTTATAA

Upstream 100 bases:

>100_bases
GCTTAGAGATAGAGTTGAAAATGTAAAAGTGAAGGCATAAATAAAGACATTCCATAGCCTCTATTGGGGCTTATGGAATG
TCTTTTATAGGTAACCTTAT

Downstream 100 bases:

>100_bases
TGATTTAATGTGAAGTAGTTCACATTTTTAAGAAAAAGAAGCAAATTATTGAAAGTAATGCTTGCAAAGTTTAATAAATT
GACATATTCTATACAAACTT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MIKFSQKYLPLAAVMSCAVLLTACSNDISVSGPIKARAGIFRTHHSTLSDPIMAISSLSEQQHEWKGTRYRLGGNSKAGI
DCSGFMQVTFRDLFGIDLPRTTSEQAEEGTRIDREEIKTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDMN
SPYWSRTFWQARRL

Sequences:

>Translated_174_residues
MIKFSQKYLPLAAVMSCAVLLTACSNDISVSGPIKARAGIFRTHHSTLSDPIMAISSLSEQQHEWKGTRYRLGGNSKAGI
DCSGFMQVTFRDLFGIDLPRTTSEQAEEGTRIDREEIKTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDMN
SPYWSRTFWQARRL
>Mature_174_residues
MIKFSQKYLPLAAVMSCAVLLTACSNDISVSGPIKARAGIFRTHHSTLSDPIMAISSLSEQQHEWKGTRYRLGGNSKAGI
DCSGFMQVTFRDLFGIDLPRTTSEQAEEGTRIDREEIKTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDMN
SPYWSRTFWQARRL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788001, Length=130, Percent_Identity=53.8461538461538, Blast_Score=154, Evalue=3e-39,
Organism=Escherichia coli, GI1788501, Length=183, Percent_Identity=43.7158469945355, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1787944, Length=113, Percent_Identity=43.3628318584071, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786421, Length=128, Percent_Identity=31.25, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 19339; Mature: 19339

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKFSQKYLPLAAVMSCAVLLTACSNDISVSGPIKARAGIFRTHHSTLSDPIMAISSLSE
CCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHCEEECCCCCHHHHHHHHHHHHH
QQHEWKGTRYRLGGNSKAGIDCSGFMQVTFRDLFGIDLPRTTSEQAEEGTRIDREEIKTG
HHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHCCCC
DLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDMNSPYWSRTFWQARRL
CEEEEECCCCCCCCEEEEEEECCEEEEEECCCCEEEECCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MIKFSQKYLPLAAVMSCAVLLTACSNDISVSGPIKARAGIFRTHHSTLSDPIMAISSLSE
CCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHCEEECCCCCHHHHHHHHHHHHH
QQHEWKGTRYRLGGNSKAGIDCSGFMQVTFRDLFGIDLPRTTSEQAEEGTRIDREEIKTG
HHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHCCCC
DLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDMNSPYWSRTFWQARRL
CEEEEECCCCCCCCEEEEEEECCEEEEEECCCCEEEECCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]