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The map label for this gene is 126208067

Identifier: 126208067

GI number: 126208067

Start: 665452

End: 666030

Strand: Direct

Name: 126208067

Synonym: APL_0585

Alternate gene names: NA

Gene position: 665452-666030 (Clockwise)

Preceding gene: 126208064

Following gene: 126208068

Centisome position: 29.26

GC content: 38.34

Gene sequence:

>579_bases
ATGTCTAAAAAAGAGAGGCTGAATGATATGGCTCGCCAGATTTTATCGGCGGCGGAGTTGCTCATTGCAAAGGAAGGTTT
GCAAAATTTATCGATGAGGAAAATCGCAAGTGAAGCCGGTATCGCAACAGGCACGCTTTATCTCTATTTCAAAACGAAAG
ACGAGTTACTGGATTGTTTGGCGGAACAATTACATGAACGATATTATCGTTATCTGAATATTCAGTTTAATCCGAACAGT
TCTTTTTTTGATCAGTATCGTGAGATTTGGAATAGGAAAAGGCACTTTCTTACGGATAATCCCATCATTGCGGCAAATTT
ATCTCAATACCAAGCGATGCTAGGTTTTAACAGTATTTTATGCCGAATAATGAATGATTCCGAATTTATTTGGAATCGTT
TTGTTGAAGAAGGTAAAAAGCAAGGTGTAATTATACCGCTTCCTAATGATCTACTTTATTGTATGAGTATCGGGGTGGCT
ACGGATATTGCTTATTTGGAACAAGTCAAGCAAGAACCCGTATCAACGGAATTTTTCGAGGAAACTATCTTACGGACTTG
GAAAGCGATTGCTTGCTAA

Upstream 100 bases:

>100_bases
GCTTATTCGTCACTATATATTGAAGCATTTTTTCTTTGATTATTTAAATGAATAAATATAGAATGAACGCTTGTTCATTA
TGTGGCGGATGGGAGATTTT

Downstream 100 bases:

>100_bases
GGAAGTTTTTCATTTTATTTTACGGAGAGACTATGACGACGGAAAACCAAAAGCCGGGTAAAGGCAGAAAGTTTTTGATT
GCGATAACCTTAGTTGTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSKKERLNDMARQILSAAELLIAKEGLQNLSMRKIASEAGIATGTLYLYFKTKDELLDCLAEQLHERYYRYLNIQFNPNS
SFFDQYREIWNRKRHFLTDNPIIAANLSQYQAMLGFNSILCRIMNDSEFIWNRFVEEGKKQGVIIPLPNDLLYCMSIGVA
TDIAYLEQVKQEPVSTEFFEETILRTWKAIAC

Sequences:

>Translated_192_residues
MSKKERLNDMARQILSAAELLIAKEGLQNLSMRKIASEAGIATGTLYLYFKTKDELLDCLAEQLHERYYRYLNIQFNPNS
SFFDQYREIWNRKRHFLTDNPIIAANLSQYQAMLGFNSILCRIMNDSEFIWNRFVEEGKKQGVIIPLPNDLLYCMSIGVA
TDIAYLEQVKQEPVSTEFFEETILRTWKAIAC
>Mature_191_residues
SKKERLNDMARQILSAAELLIAKEGLQNLSMRKIASEAGIATGTLYLYFKTKDELLDCLAEQLHERYYRYLNIQFNPNSS
FFDQYREIWNRKRHFLTDNPIIAANLSQYQAMLGFNSILCRIMNDSEFIWNRFVEEGKKQGVIIPLPNDLLYCMSIGVAT
DIAYLEQVKQEPVSTEFFEETILRTWKAIAC

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22383; Mature: 22252

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKERLNDMARQILSAAELLIAKEGLQNLSMRKIASEAGIATGTLYLYFKTKDELLDCL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHH
AEQLHERYYRYLNIQFNPNSSFFDQYREIWNRKRHFLTDNPIIAANLSQYQAMLGFNSIL
HHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH
CRIMNDSEFIWNRFVEEGKKQGVIIPLPNDLLYCMSIGVATDIAYLEQVKQEPVSTEFFE
HHHHCCHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ETILRTWKAIAC
HHHHHHHHHHCC
>Mature Secondary Structure 
SKKERLNDMARQILSAAELLIAKEGLQNLSMRKIASEAGIATGTLYLYFKTKDELLDCL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHH
AEQLHERYYRYLNIQFNPNSSFFDQYREIWNRKRHFLTDNPIIAANLSQYQAMLGFNSIL
HHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH
CRIMNDSEFIWNRFVEEGKKQGVIIPLPNDLLYCMSIGVATDIAYLEQVKQEPVSTEFFE
HHHHCCHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ETILRTWKAIAC
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]