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The map label for this gene is rdgC [H]

Identifier: 126207978

GI number: 126207978

Start: 561319

End: 562221

Strand: Reverse

Name: rdgC [H]

Synonym: APL_0494

Alternate gene names: 126207978

Gene position: 562221-561319 (Counterclockwise)

Preceding gene: 126207979

Following gene: 126207977

Centisome position: 24.72

GC content: 39.65

Gene sequence:

>903_bases
ATGTTTTGGTTTAAAAATCTAATGACATACCGTTTAACTCAAGCGGTCGATTTTTCAAATTTAGAAGAGCAATTAAAGCA
AGCGGCTTTCACGCCGTGCAGCAAATCTGATGTGAGTAAATTCGGGTGGTCTACTCCACTCTTTGCAAGTGATTCGCTTT
GCTTCCGCCAAGGCTCGAATATCTTGTTAGTTTCGCACAAAGAAGAGAAAATTTTGCCAGCACACGTTGTGAATAAGAAA
GCCGAAGAAAGAATTAAAGCACTTGAAGAAAAAGAACAGTGCAAGCTTAAGAAAACCGAAAAGCAAGCGATTAAAGATGA
CGTTACTCAAGAATTATTAATTCACGCATTTAGTAAAGATACATTTACCGCAGCCTGGATTGATGAGGCGAATAAGCGTA
TTTATGTAGATTCCAGCTCAAGTAAACGAGCGGAAGATACGCTTGCCTTATTGCGTAAAACATTAGGTTCGTTGCCGGTT
GTTCCACTTTCATTCGCTTTATTGCCAAGCGAAGTAATGACGAAATGGGTAGCTGACAGCACTCCGCCGGACTGGCTAAA
CTTACTTGAAGAAGCTGAATTAAAATCGTTTGATACAGCCAGCCAAGTGCGATGCAAGCACCAAGATTTAGAAACGCATG
AAATCGAACAGCATTTACAAGCGGGCAAATTTGTTACAAAACTTGCAGTCGAATGGGAGAACCATTTGAGCTGTACGATT
GATGAATCGGGTGCAATTTTGAAAATCAAGTTTACCGAAGATGTTCGCGATAAAAACGACGACATTCTGAAAGAAGATGT
TGCTCAACGTTTCGATGCGGATTTTTTCTTAATGGCCGAAGAATTATCAACTTTTATGAAAAAGTTAATTGATGAGTTCG
GTGGCATTAAAGAGCGAATTTAA

Upstream 100 bases:

>100_bases
AAATGACAACAAATAAACCGCTAACTAAGCGGTTTTTATTACCCAAAATAATTAATAACAAGTTCCGCCAAGTGCGGGAT
TTTTACTGTAAGGAACAAAT

Downstream 100 bases:

>100_bases
CCAATAGGCCGCCGTAACAAGCGGTCGAATTTATCGAAGAAAAACGCAAGCGAGCAAAAGCATTAGCCGAAAATTTTCAG
CTACGAGCTGAGATTAAAGC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MFWFKNLMTYRLTQAVDFSNLEEQLKQAAFTPCSKSDVSKFGWSTPLFASDSLCFRQGSNILLVSHKEEKILPAHVVNKK
AEERIKALEEKEQCKLKKTEKQAIKDDVTQELLIHAFSKDTFTAAWIDEANKRIYVDSSSSKRAEDTLALLRKTLGSLPV
VPLSFALLPSEVMTKWVADSTPPDWLNLLEEAELKSFDTASQVRCKHQDLETHEIEQHLQAGKFVTKLAVEWENHLSCTI
DESGAILKIKFTEDVRDKNDDILKEDVAQRFDADFFLMAEELSTFMKKLIDEFGGIKERI

Sequences:

>Translated_300_residues
MFWFKNLMTYRLTQAVDFSNLEEQLKQAAFTPCSKSDVSKFGWSTPLFASDSLCFRQGSNILLVSHKEEKILPAHVVNKK
AEERIKALEEKEQCKLKKTEKQAIKDDVTQELLIHAFSKDTFTAAWIDEANKRIYVDSSSSKRAEDTLALLRKTLGSLPV
VPLSFALLPSEVMTKWVADSTPPDWLNLLEEAELKSFDTASQVRCKHQDLETHEIEQHLQAGKFVTKLAVEWENHLSCTI
DESGAILKIKFTEDVRDKNDDILKEDVAQRFDADFFLMAEELSTFMKKLIDEFGGIKERI
>Mature_300_residues
MFWFKNLMTYRLTQAVDFSNLEEQLKQAAFTPCSKSDVSKFGWSTPLFASDSLCFRQGSNILLVSHKEEKILPAHVVNKK
AEERIKALEEKEQCKLKKTEKQAIKDDVTQELLIHAFSKDTFTAAWIDEANKRIYVDSSSSKRAEDTLALLRKTLGSLPV
VPLSFALLPSEVMTKWVADSTPPDWLNLLEEAELKSFDTASQVRCKHQDLETHEIEQHLQAGKFVTKLAVEWENHLSCTI
DESGAILKIKFTEDVRDKNDDILKEDVAQRFDADFFLMAEELSTFMKKLIDEFGGIKERI

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=303, Percent_Identity=45.8745874587459, Blast_Score=271, Evalue=5e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 34340; Mature: 34340

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWFKNLMTYRLTQAVDFSNLEEQLKQAAFTPCSKSDVSKFGWSTPLFASDSLCFRQGSN
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHCCCC
ILLVSHKEEKILPAHVVNKKAEERIKALEEKEQCKLKKTEKQAIKDDVTQELLIHAFSKD
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TFTAAWIDEANKRIYVDSSSSKRAEDTLALLRKTLGSLPVVPLSFALLPSEVMTKWVADS
CEEEHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCCC
TPPDWLNLLEEAELKSFDTASQVRCKHQDLETHEIEQHLQAGKFVTKLAVEWENHLSCTI
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DESGAILKIKFTEDVRDKNDDILKEDVAQRFDADFFLMAEELSTFMKKLIDEFGGIKERI
ECCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MFWFKNLMTYRLTQAVDFSNLEEQLKQAAFTPCSKSDVSKFGWSTPLFASDSLCFRQGSN
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHCCCC
ILLVSHKEEKILPAHVVNKKAEERIKALEEKEQCKLKKTEKQAIKDDVTQELLIHAFSKD
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TFTAAWIDEANKRIYVDSSSSKRAEDTLALLRKTLGSLPVVPLSFALLPSEVMTKWVADS
CEEEHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHCCC
TPPDWLNLLEEAELKSFDTASQVRCKHQDLETHEIEQHLQAGKFVTKLAVEWENHLSCTI
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DESGAILKIKFTEDVRDKNDDILKEDVAQRFDADFFLMAEELSTFMKKLIDEFGGIKERI
ECCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA