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The map label for this gene is smpA [H]

Identifier: 126207912

GI number: 126207912

Start: 485468

End: 485812

Strand: Reverse

Name: smpA [H]

Synonym: APL_0428

Alternate gene names: 126207912

Gene position: 485812-485468 (Counterclockwise)

Preceding gene: 126207913

Following gene: 126207911

Centisome position: 21.36

GC content: 36.52

Gene sequence:

>345_bases
ATGAAAATGAAATCTCTGTTAGCTATCGCACTACTTGCGGTGGGGGTAACCTCTTGTTCTACCGTAAAAAAAGTCGTGTA
TCGTATTGATGTTCCGCAAGGCAATTACTTAGAACAAGAAAAGATTGACCAAGTTAAAGTCGGTATGGATAAAACGCAAG
TACAATATTTGCTTGGTACGCCGATGCTAAAAGATACCTTTAATCAAGATCGTTGGAGTTATGTTTATATCAAACGCGAA
GGCTATAATGATCCTATCCAACATACGCTTTTTGTTAATTTCGATAGTAAAGGTCTTGTAAGTAATATCACCTTAGACAA
ACCTATTACGAATGAAGCGCAATAA

Upstream 100 bases:

>100_bases
TTGCGTGATCAGTTAGCACGCAATAAGTAATGGAAAATTTTTATTAGTTTGGGTATTATCTATCCAATCATTTTGAACAA
TTCAAAGGTCGATAAATATT

Downstream 100 bases:

>100_bases
TCATTGACAACTTCAAACGCCCACTTTATATAGTGGGCTTTCTTTTACCCATTACCTTTAATTAGTTTTTTTTATCATAC
AAAAAGTATGTATGATTTCA

Product: small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKMKSLLAIALLAVGVTSCSTVKKVVYRIDVPQGNYLEQEKIDQVKVGMDKTQVQYLLGTPMLKDTFNQDRWSYVYIKRE
GYNDPIQHTLFVNFDSKGLVSNITLDKPITNEAQ

Sequences:

>Translated_114_residues
MKMKSLLAIALLAVGVTSCSTVKKVVYRIDVPQGNYLEQEKIDQVKVGMDKTQVQYLLGTPMLKDTFNQDRWSYVYIKRE
GYNDPIQHTLFVNFDSKGLVSNITLDKPITNEAQ
>Mature_114_residues
MKMKSLLAIALLAVGVTSCSTVKKVVYRIDVPQGNYLEQEKIDQVKVGMDKTQVQYLLGTPMLKDTFNQDRWSYVYIKRE
GYNDPIQHTLFVNFDSKGLVSNITLDKPITNEAQ

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=109, Percent_Identity=41.2844036697248, Blast_Score=96, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 12988; Mature: 12988

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKSLLAIALLAVGVTSCSTVKKVVYRIDVPQGNYLEQEKIDQVKVGMDKTQVQYLLGT
CCHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHCC
PMLKDTFNQDRWSYVYIKREGYNDPIQHTLFVNFDSKGLVSNITLDKPITNEAQ
CCHHHCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MKMKSLLAIALLAVGVTSCSTVKKVVYRIDVPQGNYLEQEKIDQVKVGMDKTQVQYLLGT
CCHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHCC
PMLKDTFNQDRWSYVYIKREGYNDPIQHTLFVNFDSKGLVSNITLDKPITNEAQ
CCHHHCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]