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The map label for this gene is ndpA [C]

Identifier: 126207913

GI number: 126207913

Start: 485883

End: 486884

Strand: Reverse

Name: ndpA [C]

Synonym: APL_0429

Alternate gene names: 126207913

Gene position: 486884-485883 (Counterclockwise)

Preceding gene: 126207917

Following gene: 126207912

Centisome position: 21.41

GC content: 39.12

Gene sequence:

>1002_bases
ATGAGCATTAACGTTACTGAAATCGTCCTGCACCAGATTCATCAAACCGAAGGCGAAACATCTGAGTTAAATACGGTACT
TCGCGACAATCTACTTGCCATCAGTCCTGAAGTGGAGCAAATGATGTTACAACTTCACCAAGCTTACCAAAGTAAAGCGA
AGGCTTACGGTATATTTAAAAATGAATCTATTTTTGCTCAGCAACTTAATCGCTTATTAGAACAGGAAACTGATTTTTTA
CCGTTCAGTCACAGTTGTGCGAAAATGCTTTCTAGCGAATTAGCCAAATATCCTTTTGCATCAGGCGGGACTTTTATTCT
TTGTCGCTATAACTTTTTAGCAACGGATTATTTATTTATCGCATTGATTGATAGCCGTACTTCTATGCTGGTGGACGACC
AATTAGAGATAAAACGTACCGAATATTTAGATATTACCCAGTATGATATCGCTTGCCGTATCAATTTGACCGAATTAAAA
ATCAATGCGCAATCAAACCGCTATCTCACCTTTATTAAAGGACGAGTCGGACGAAAAATTGCAGACTTCTTTATGGATTT
TCTGAGTGCGGAAGAAGGTTTAAATCCTCAATTACAAAATCAGACGCTTTTACAAGCGGTGAGCGATTATTGCGATCAAG
GCGAATTATCCGCACCGCAAACACGTGAAGTGAAAAAACAAGTATTTGAATACTGTAAAGGACAAATTAACAGCGGTGAG
GAAATCGCACTAAGTGAATTATCCGAAGCGCTACCGACACTCAACGAAGTTGATTTTGCACAATTTACTCAAGAACAAGA
ATACGGACTTGAAGAAAATATTCCGCCGGTACGTAATGCGTTAAAAACCTTAACCAAATATTCCGGCTCGGGCAAAGGCG
TAACCATTAGTTTTAATGCGGACTTACTCGGCGAACGTTTAATTTGGGATGAACTAAACGATACATTAACCATCAAAGGA
TTGCCGGCAAATTTGCGTGATCAGTTAGCACGCAATAAGTAA

Upstream 100 bases:

>100_bases
TTAGTCATAGTGAATTCCTTCTTTTAGTAATGAAAAATAGTGCGTTTAATGATAATATCTCCCACCTTTTATTTCTACCC
CTAATCTCAAGAGAAATAGT

Downstream 100 bases:

>100_bases
TGGAAAATTTTTATTAGTTTGGGTATTATCTATCCAATCATTTTGAACAATTCAAAGGTCGATAAATATTATGAAAATGA
AATCTCTGTTAGCTATCGCA

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSINVTEIVLHQIHQTEGETSELNTVLRDNLLAISPEVEQMMLQLHQAYQSKAKAYGIFKNESIFAQQLNRLLEQETDFL
PFSHSCAKMLSSELAKYPFASGGTFILCRYNFLATDYLFIALIDSRTSMLVDDQLEIKRTEYLDITQYDIACRINLTELK
INAQSNRYLTFIKGRVGRKIADFFMDFLSAEEGLNPQLQNQTLLQAVSDYCDQGELSAPQTREVKKQVFEYCKGQINSGE
EIALSELSEALPTLNEVDFAQFTQEQEYGLEENIPPVRNALKTLTKYSGSGKGVTISFNADLLGERLIWDELNDTLTIKG
LPANLRDQLARNK

Sequences:

>Translated_333_residues
MSINVTEIVLHQIHQTEGETSELNTVLRDNLLAISPEVEQMMLQLHQAYQSKAKAYGIFKNESIFAQQLNRLLEQETDFL
PFSHSCAKMLSSELAKYPFASGGTFILCRYNFLATDYLFIALIDSRTSMLVDDQLEIKRTEYLDITQYDIACRINLTELK
INAQSNRYLTFIKGRVGRKIADFFMDFLSAEEGLNPQLQNQTLLQAVSDYCDQGELSAPQTREVKKQVFEYCKGQINSGE
EIALSELSEALPTLNEVDFAQFTQEQEYGLEENIPPVRNALKTLTKYSGSGKGVTISFNADLLGERLIWDELNDTLTIKG
LPANLRDQLARNK
>Mature_332_residues
SINVTEIVLHQIHQTEGETSELNTVLRDNLLAISPEVEQMMLQLHQAYQSKAKAYGIFKNESIFAQQLNRLLEQETDFLP
FSHSCAKMLSSELAKYPFASGGTFILCRYNFLATDYLFIALIDSRTSMLVDDQLEIKRTEYLDITQYDIACRINLTELKI
NAQSNRYLTFIKGRVGRKIADFFMDFLSAEEGLNPQLQNQTLLQAVSDYCDQGELSAPQTREVKKQVFEYCKGQINSGEE
IALSELSEALPTLNEVDFAQFTQEQEYGLEENIPPVRNALKTLTKYSGSGKGVTISFNADLLGERLIWDELNDTLTIKGL
PANLRDQLARNK

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family

Homologues:

Organism=Escherichia coli, GI1788513, Length=331, Percent_Identity=50.1510574018127, Blast_Score=337, Evalue=6e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDPA_ACTP2 (A3MZE7)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001053138.1
- STRING:   A3MZE7
- GeneID:   4849616
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0429
- eggNOG:   COG3081
- HOGENOM:   HBG296787
- OMA:   TDYLFIA
- PhylomeDB:   A3MZE7
- ProtClustDB:   PRK00378
- BioCyc:   APLE416269:APL_0429-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00730
- InterPro:   IPR007358

Pfam domain/function: PF04245 NA37

EC number: NA

Molecular weight: Translated: 37797; Mature: 37666

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINVTEIVLHQIHQTEGETSELNTVLRDNLLAISPEVEQMMLQLHQAYQSKAKAYGIFK
CCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCC
NESIFAQQLNRLLEQETDFLPFSHSCAKMLSSELAKYPFASGGTFILCRYNFLATDYLFI
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHEE
ALIDSRTSMLVDDQLEIKRTEYLDITQYDIACRINLTELKINAQSNRYLTFIKGRVGRKI
EEECCCCCEEECCCHHHHHHCEEEEEEEEEEEEEEEEEEEEECCCCCEEEEECCHHHHHH
ADFFMDFLSAEEGLNPQLQNQTLLQAVSDYCDQGELSAPQTREVKKQVFEYCKGQINSGE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
EIALSELSEALPTLNEVDFAQFTQEQEYGLEENIPPVRNALKTLTKYSGSGKGVTISFNA
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECH
DLLGERLIWDELNDTLTIKGLPANLRDQLARNK
HHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCC
>Mature Secondary Structure 
SINVTEIVLHQIHQTEGETSELNTVLRDNLLAISPEVEQMMLQLHQAYQSKAKAYGIFK
CCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCC
NESIFAQQLNRLLEQETDFLPFSHSCAKMLSSELAKYPFASGGTFILCRYNFLATDYLFI
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHEE
ALIDSRTSMLVDDQLEIKRTEYLDITQYDIACRINLTELKINAQSNRYLTFIKGRVGRKI
EEECCCCCEEECCCHHHHHHCEEEEEEEEEEEEEEEEEEEEECCCCCEEEEECCHHHHHH
ADFFMDFLSAEEGLNPQLQNQTLLQAVSDYCDQGELSAPQTREVKKQVFEYCKGQINSGE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
EIALSELSEALPTLNEVDFAQFTQEQEYGLEENIPPVRNALKTLTKYSGSGKGVTISFNA
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECH
DLLGERLIWDELNDTLTIKGLPANLRDQLARNK
HHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA