Click here to switch to the map view.

The map label for this gene is D15 [C]

Identifier: 126207895

GI number: 126207895

Start: 467627

End: 470008

Strand: Reverse

Name: D15 [C]

Synonym: APL_0411

Alternate gene names: 126207895

Gene position: 470008-467627 (Counterclockwise)

Preceding gene: 126207896

Following gene: 126207894

Centisome position: 20.66

GC content: 41.52

Gene sequence:

>2382_bases
ATGCAAAAATTCTTACTTTCTTCTCTTTTAATTGCAAACGGTGTGGTCGCAGCACCTTTTGTCGTTAAAGATATTCGTGT
TGACGGCGTACAAGCCGAAACAGGTCAGGCTATCATTTCTTCGTTACCGGTGAAAGTCGGTCAAACGGCTACGGATAATG
ATGTCGCAAACGTGGTAAGACAACTTTTCGGACAAAATCGCTTTGATGACGTCCGAGCGACACGAGAAGGTAATACCTTA
GTCATTAAAGTTGCCGAGCGACCTTTCATCAATAGCGTTGATGTCGAAGGTAACAGTGCAATTCCGAAAGAGCCGTTACA
GGAAAACTTAAAGGCGAACCTTATCACTAAAGGTGAACTCTATGACGCTGCAAAATTAGAAGGTTTTAAACAAGGCTTAC
TTGATCATTACCATTCTATCGGTCGCTATGAAGCTAAAATCGATACGACAACAACTCGCAACGAAAACGGCGGTATTAAC
ATTAAATTAAATATTACCGAGGGCGAAGTCGCTTACGTTAAAAATATAAAATTCGAAGGCAATCAAGTATTTACCGATAA
AGAATTAACTAAACCGTTAGATATTCAGCCGGACGTATCTTGGTGGAATATTTTTGAAAGCAGTAAATTCGAGCAACAGG
CTTATAATAAAGATTTGGAAACGTTACGCGATTATTATTTAAATCGCGGTTACGCTCAATTTGCATTGCAAGATACCGAT
GTAACCTTTAACGATAAAAAAACCGAAGTGGATCTTACTTACAAAATTCACGAAGGCGTACAATATAATATTAGCGACAT
TCGTATCATCGGTAATACGGCAAAACTCGATAACGAATTAAATACGTTATTAAAAGACTTCGAACCGGGTCAATTATTCC
GTAAAAGCGAATTGGTCGAGATCGAAGAAGGTATTAAACAAATACTCGGCGAACATGGTTTCGGCTCGGCAAAAGTCGAT
TTATATCCTAAATTCAACGAGCAAGATAAAACGGTACAAATTAACTTTATCGTTGATGCCGGTCGTCGTATTTACGTACG
CAAAATCCGCTTTGAAGGCAATGATGTAACGGCGGATTCAACCTTACGTCGCGAAATGCGCCAACAAGAAGGTGCGTGGC
TATCCACTACGAATGCGGCATTAGGTAAATCTCGTTTAGAACGTACCGGCTTCTATGAAACCGTCGATATGACGATGCCG
ACCGTTCAAAATACCGATGACCAAGTGGATTTAGTCTATAAAATTAAAGAGCGTAATACCGGTTCGATTAACTTCGGTAT
CGGTTACGGTACGGAAAGCGGTATCAGCTACCAAGCGGGTATCAAACAAGACAACTTCTTGGGGATGGGTTCGACCGTCA
GCTTAAGCGGTAGGCGTAATGACTACGGCACAAGCGTAAACTTAGGTTACACCGAACCGTACTTCACTAAAGACGGCGTA
AGTTTAGGCGGTAACGTTTTCTACGAAGATTACGATAACTCGGACAGCAACACCTCTGCGGCTTATAAACGTCAAACTTA
CGGTATTAACGGTACGCTAGGCTTCCCGGTAAATGAAAACAACTCATATTACCTAGGCTTAGGTTATACGCACGATAAGT
TAAAAAATGTCAAACGAGAATTTACTCGTGAAAAATACGTGAAATCGATGAACTTCCCAATTATTGACGGCAGTAATCGT
TATGAGCGTATTAAAGCGGACGATTTTGATTTCTCATTCGGCTGGAACTACAATAGCTTAAACCGCGGGTATTTCCCAAC
CGAAGGTACTACCGCAAATATCGGCGGTAAAGTGACGATTCCGGGTTCCGATAATAAATATTATCGCTTAAATGCCGATT
TTAGAAATTATTATCCGCTTAATCGTGAACACAAATGGGTCATTTCAACTAAAGCCGGTTTAGCTTATACCAAAGGTTTC
GGCGGTAAAGAAGTGCCGTTCTATCAACTTTATTCGGCGGGAGGTATCGGCACATTGCGCGGTTTCGCATACGGTGCGAT
TGGTCCTAAAGCAATTTATTACTCTACGCAGAGTAATAAATTCACGAATGCAAGCGATGATGTCGTCGGCGGTAATGCGA
TGGCGAATGCAAGTTTGGAATTAATCACCCCGACACCGTTTGTCAGTGATAAATATCAGCACAACGTACGTACGTCATTA
TTTGTAGATGCGGCAAGCGTATGGAATACGAAATGGAAAAAATCCGTATATCCGACATTACCGGATTATAAAGATTACAA
ACGTGTACGCGCTTCCGCCGGTATTGCGTTCCAATGGCAATCCCCGATCGGTCCTTTAGCGTTCTCTTATGCTAAACCGA
TTAAAAAATATGCGGGCGATGAAATCGAGCAATTCCAATTTAGTATCGGTAGCTCGTTCTAA

Upstream 100 bases:

>100_bases
ATGGCTTTTGCCTTTATGAATGATCTCATTCACTTTTAATTCCAGGTTATAAGCGGTCGATTCCGCTGATAATTTTGCAA
ACATTCATAGGATAATTTCA

Downstream 100 bases:

>100_bases
TCGATTAACAAGCGGTTAGATTTTGTCTATTTTTTGCAAAATTTTTGATAAATCCGACCGCTTATTTTCGTGCTACTCAG
TACCGAATTAATTAAAAGAA

Product: protective surface antigen D15 precursor

Products: NA

Alternate protein names: 80 kDa D15 antigen; D-15-Ag; Outer membrane protein D15 [H]

Number of amino acids: Translated: 793; Mature: 793

Protein sequence:

>793_residues
MQKFLLSSLLIANGVVAAPFVVKDIRVDGVQAETGQAIISSLPVKVGQTATDNDVANVVRQLFGQNRFDDVRATREGNTL
VIKVAERPFINSVDVEGNSAIPKEPLQENLKANLITKGELYDAAKLEGFKQGLLDHYHSIGRYEAKIDTTTTRNENGGIN
IKLNITEGEVAYVKNIKFEGNQVFTDKELTKPLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDYYLNRGYAQFALQDTD
VTFNDKKTEVDLTYKIHEGVQYNISDIRIIGNTAKLDNELNTLLKDFEPGQLFRKSELVEIEEGIKQILGEHGFGSAKVD
LYPKFNEQDKTVQINFIVDAGRRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTTNAALGKSRLERTGFYETVDMTMP
TVQNTDDQVDLVYKIKERNTGSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGRRNDYGTSVNLGYTEPYFTKDGV
SLGGNVFYEDYDNSDSNTSAAYKRQTYGINGTLGFPVNENNSYYLGLGYTHDKLKNVKREFTREKYVKSMNFPIIDGSNR
YERIKADDFDFSFGWNYNSLNRGYFPTEGTTANIGGKVTIPGSDNKYYRLNADFRNYYPLNREHKWVISTKAGLAYTKGF
GGKEVPFYQLYSAGGIGTLRGFAYGAIGPKAIYYSTQSNKFTNASDDVVGGNAMANASLELITPTPFVSDKYQHNVRTSL
FVDAASVWNTKWKKSVYPTLPDYKDYKRVRASAGIAFQWQSPIGPLAFSYAKPIKKYAGDEIEQFQFSIGSSF

Sequences:

>Translated_793_residues
MQKFLLSSLLIANGVVAAPFVVKDIRVDGVQAETGQAIISSLPVKVGQTATDNDVANVVRQLFGQNRFDDVRATREGNTL
VIKVAERPFINSVDVEGNSAIPKEPLQENLKANLITKGELYDAAKLEGFKQGLLDHYHSIGRYEAKIDTTTTRNENGGIN
IKLNITEGEVAYVKNIKFEGNQVFTDKELTKPLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDYYLNRGYAQFALQDTD
VTFNDKKTEVDLTYKIHEGVQYNISDIRIIGNTAKLDNELNTLLKDFEPGQLFRKSELVEIEEGIKQILGEHGFGSAKVD
LYPKFNEQDKTVQINFIVDAGRRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTTNAALGKSRLERTGFYETVDMTMP
TVQNTDDQVDLVYKIKERNTGSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGRRNDYGTSVNLGYTEPYFTKDGV
SLGGNVFYEDYDNSDSNTSAAYKRQTYGINGTLGFPVNENNSYYLGLGYTHDKLKNVKREFTREKYVKSMNFPIIDGSNR
YERIKADDFDFSFGWNYNSLNRGYFPTEGTTANIGGKVTIPGSDNKYYRLNADFRNYYPLNREHKWVISTKAGLAYTKGF
GGKEVPFYQLYSAGGIGTLRGFAYGAIGPKAIYYSTQSNKFTNASDDVVGGNAMANASLELITPTPFVSDKYQHNVRTSL
FVDAASVWNTKWKKSVYPTLPDYKDYKRVRASAGIAFQWQSPIGPLAFSYAKPIKKYAGDEIEQFQFSIGSSF
>Mature_793_residues
MQKFLLSSLLIANGVVAAPFVVKDIRVDGVQAETGQAIISSLPVKVGQTATDNDVANVVRQLFGQNRFDDVRATREGNTL
VIKVAERPFINSVDVEGNSAIPKEPLQENLKANLITKGELYDAAKLEGFKQGLLDHYHSIGRYEAKIDTTTTRNENGGIN
IKLNITEGEVAYVKNIKFEGNQVFTDKELTKPLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDYYLNRGYAQFALQDTD
VTFNDKKTEVDLTYKIHEGVQYNISDIRIIGNTAKLDNELNTLLKDFEPGQLFRKSELVEIEEGIKQILGEHGFGSAKVD
LYPKFNEQDKTVQINFIVDAGRRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTTNAALGKSRLERTGFYETVDMTMP
TVQNTDDQVDLVYKIKERNTGSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGRRNDYGTSVNLGYTEPYFTKDGV
SLGGNVFYEDYDNSDSNTSAAYKRQTYGINGTLGFPVNENNSYYLGLGYTHDKLKNVKREFTREKYVKSMNFPIIDGSNR
YERIKADDFDFSFGWNYNSLNRGYFPTEGTTANIGGKVTIPGSDNKYYRLNADFRNYYPLNREHKWVISTKAGLAYTKGF
GGKEVPFYQLYSAGGIGTLRGFAYGAIGPKAIYYSTQSNKFTNASDDVVGGNAMANASLELITPTPFVSDKYQHNVRTSL
FVDAASVWNTKWKKSVYPTLPDYKDYKRVRASAGIAFQWQSPIGPLAFSYAKPIKKYAGDEIEQFQFSIGSSF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=812, Percent_Identity=46.6748768472906, Blast_Score=755, Evalue=0.0,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 89143; Mature: 89143

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKFLLSSLLIANGVVAAPFVVKDIRVDGVQAETGQAIISSLPVKVGQTATDNDVANVVR
CHHHHHHHHHHHCCCEECCEEEEEEEECCEECCHHHHHHHHCCHHCCCCCCCHHHHHHHH
QLFGQNRFDDVRATREGNTLVIKVAERPFINSVDVEGNSAIPKEPLQENLKANLITKGEL
HHHCCCCCCHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCCCCHHHHCCCEEEEECCCC
YDAAKLEGFKQGLLDHYHSIGRYEAKIDTTTTRNENGGINIKLNITEGEVAYVKNIKFEG
CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEEECC
NQVFTDKELTKPLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDYYLNRGYAQFALQDTD
CEEECCHHCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCC
VTFNDKKTEVDLTYKIHEGVQYNISDIRIIGNTAKLDNELNTLLKDFEPGQLFRKSELVE
EEECCCCEEEEEEEEEECCCEECCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
IEEGIKQILGEHGFGSAKVDLYPKFNEQDKTVQINFIVDAGRRIYVRKIRFEGNDVTADS
HHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCHH
TLRREMRQQEGAWLSTTNAALGKSRLERTGFYETVDMTMPTVQNTDDQVDLVYKIKERNT
HHHHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEECCCC
GSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGRRNDYGTSVNLGYTEPYFTKDGV
CEEEEEEECCCCCCCEEECCCCCCCEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCC
SLGGNVFYEDYDNSDSNTSAAYKRQTYGINGTLGFPVNENNSYYLGLGYTHDKLKNVKRE
CCCCEEEEECCCCCCCCCCHHHHHEEECCCCEEECEECCCCCEEEEECCCHHHHHHHHHH
FTREKYVKSMNFPIIDGSNRYERIKADDFDFSFGWNYNSLNRGYFPTEGTTANIGGKVTI
HHHHHHHHHCCCCEECCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCEEEE
PGSDNKYYRLNADFRNYYPLNREHKWVISTKAGLAYTKGFGGKEVPFYQLYSAGGIGTLR
CCCCCCEEEEECCHHHCCCCCCCCEEEEEECCCEEEECCCCCCCCCEEEEECCCCCHHHH
GFAYGAIGPKAIYYSTQSNKFTNASDDVVGGNAMANASLELITPTPFVSDKYQHNVRTSL
HHEECCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCHHCCCCEEE
FVDAASVWNTKWKKSVYPTLPDYKDYKRVRASAGIAFQWQSPIGPLAFSYAKPIKKYAGD
EEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCC
EIEQFQFSIGSSF
HHHHHHHHCCCCC
>Mature Secondary Structure
MQKFLLSSLLIANGVVAAPFVVKDIRVDGVQAETGQAIISSLPVKVGQTATDNDVANVVR
CHHHHHHHHHHHCCCEECCEEEEEEEECCEECCHHHHHHHHCCHHCCCCCCCHHHHHHHH
QLFGQNRFDDVRATREGNTLVIKVAERPFINSVDVEGNSAIPKEPLQENLKANLITKGEL
HHHCCCCCCHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCCCCHHHHCCCEEEEECCCC
YDAAKLEGFKQGLLDHYHSIGRYEAKIDTTTTRNENGGINIKLNITEGEVAYVKNIKFEG
CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEEECC
NQVFTDKELTKPLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDYYLNRGYAQFALQDTD
CEEECCHHCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCC
VTFNDKKTEVDLTYKIHEGVQYNISDIRIIGNTAKLDNELNTLLKDFEPGQLFRKSELVE
EEECCCCEEEEEEEEEECCCEECCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
IEEGIKQILGEHGFGSAKVDLYPKFNEQDKTVQINFIVDAGRRIYVRKIRFEGNDVTADS
HHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCHH
TLRREMRQQEGAWLSTTNAALGKSRLERTGFYETVDMTMPTVQNTDDQVDLVYKIKERNT
HHHHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEEECCCC
GSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGRRNDYGTSVNLGYTEPYFTKDGV
CEEEEEEECCCCCCCEEECCCCCCCEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCC
SLGGNVFYEDYDNSDSNTSAAYKRQTYGINGTLGFPVNENNSYYLGLGYTHDKLKNVKRE
CCCCEEEEECCCCCCCCCCHHHHHEEECCCCEEECEECCCCCEEEEECCCHHHHHHHHHH
FTREKYVKSMNFPIIDGSNRYERIKADDFDFSFGWNYNSLNRGYFPTEGTTANIGGKVTI
HHHHHHHHHCCCCEECCCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCEEEE
PGSDNKYYRLNADFRNYYPLNREHKWVISTKAGLAYTKGFGGKEVPFYQLYSAGGIGTLR
CCCCCCEEEEECCHHHCCCCCCCCEEEEEECCCEEEECCCCCCCCCEEEEECCCCCHHHH
GFAYGAIGPKAIYYSTQSNKFTNASDDVVGGNAMANASLELITPTPFVSDKYQHNVRTSL
HHEECCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCHHCCCCEEE
FVDAASVWNTKWKKSVYPTLPDYKDYKRVRASAGIAFQWQSPIGPLAFSYAKPIKKYAGD
EEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCC
EIEQFQFSIGSSF
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7737523; 9284140 [H]