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The map label for this gene is skp [H]

Identifier: 126207894

GI number: 126207894

Start: 466705

End: 467511

Strand: Reverse

Name: skp [H]

Synonym: APL_0410

Alternate gene names: 126207894

Gene position: 467511-466705 (Counterclockwise)

Preceding gene: 126207895

Following gene: 126207893

Centisome position: 20.55

GC content: 40.77

Gene sequence:

>807_bases
ATGAAAAAATTATTTAAAGCAGCAACAGTAACCGCAGCATTAGCAACCGCAGGCTTGGCTCAAGCAAGCGATACTATCGG
TTTCGTAGATCCGAACTATTTACTGCAAAATCACCCTGTTGCCATTGATGCGGCACAGAAATTTGAAAAATTTATGAAAG
AAGGCCAAAGTAAATTCGCCGACGAAGATAAAAAATTAGCGGAAGAAAATAAAGCCTTAACCGCAGAACGAAATAAACTT
GAAAGCGATGCGAAAAAATTACAAGAAGAACAAACAAAAGTAGAAGCGTCACTTAAGAAAAAATCCGCCGCATTAGAAAA
AGATGCGCCGCGTTTACGCTCTAAAGAAATTCAAGCGCGTCAAAACGCAATCGAAGCGGAATATAAAGCGTTCCAAAACA
AAGTTTCGGCAATCCAAAAACGTGAAGCCGACTTTGGTAAAAAAGCCGAAGCCTTCCAGAAAAAAGCGGACGCTTTCCAA
GAAAAATTAAATAAAGCGCAACAAGAAGCCGGCGGTATGGATCCTCAAGCGGTACAAAAACAAGTGGTTGAGGAAATTAA
CGCAACAGTGAAAGAAGTAGCTAAATCAAAAGGTTATACTTTAGTATTACCACCGTCCGTTGCACTGTATGCGGAAGATG
AAACCAAAGACATTACCGAAAAAGTGTTGGAAGCGTTAAAAGCGAAACACCCTGAAATTAAAATCGAACAACCGGTTGCA
AATCCGGAGGTAAAAGCGGAAGAAGCTAAACCGGCAACCGACGCACCTCAAGCAGAAACAACCAAACCAGAAGAAGCGAA
AAAATAA

Upstream 100 bases:

>100_bases
TTAGATTTTGTCTATTTTTTGCAAAATTTTTGATAAATCCGACCGCTTATTTTCGTGCTACTCAGTACCGAATTAATTAA
AAGAAATAAAGGATATCTAA

Downstream 100 bases:

>100_bases
TGGCTAATTTCCGTTTAATTGAACTTGCGGAGCAAATCGGCGGTACTCTAAGGGGTAACGCCGATTTGGCTATTTCTAGC
ATTGCCGCATTAGATAAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: p28 [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKKLFKAATVTAALATAGLAQASDTIGFVDPNYLLQNHPVAIDAAQKFEKFMKEGQSKFADEDKKLAEENKALTAERNKL
ESDAKKLQEEQTKVEASLKKKSAALEKDAPRLRSKEIQARQNAIEAEYKAFQNKVSAIQKREADFGKKAEAFQKKADAFQ
EKLNKAQQEAGGMDPQAVQKQVVEEINATVKEVAKSKGYTLVLPPSVALYAEDETKDITEKVLEALKAKHPEIKIEQPVA
NPEVKAEEAKPATDAPQAETTKPEEAKK

Sequences:

>Translated_268_residues
MKKLFKAATVTAALATAGLAQASDTIGFVDPNYLLQNHPVAIDAAQKFEKFMKEGQSKFADEDKKLAEENKALTAERNKL
ESDAKKLQEEQTKVEASLKKKSAALEKDAPRLRSKEIQARQNAIEAEYKAFQNKVSAIQKREADFGKKAEAFQKKADAFQ
EKLNKAQQEAGGMDPQAVQKQVVEEINATVKEVAKSKGYTLVLPPSVALYAEDETKDITEKVLEALKAKHPEIKIEQPVA
NPEVKAEEAKPATDAPQAETTKPEEAKK
>Mature_268_residues
MKKLFKAATVTAALATAGLAQASDTIGFVDPNYLLQNHPVAIDAAQKFEKFMKEGQSKFADEDKKLAEENKALTAERNKL
ESDAKKLQEEQTKVEASLKKKSAALEKDAPRLRSKEIQARQNAIEAEYKAFQNKVSAIQKREADFGKKAEAFQKKADAFQ
EKLNKAQQEAGGMDPQAVQKQVVEEINATVKEVAKSKGYTLVLPPSVALYAEDETKDITEKVLEALKAKHPEIKIEQPVA
NPEVKAEEAKPATDAPQAETTKPEEAKK

Specific function: Unknown

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 29521; Mature: 29521

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFKAATVTAALATAGLAQASDTIGFVDPNYLLQNHPVAIDAAQKFEKFMKEGQSKFA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEHHHHHHHHHHHHHHHHHH
DEDKKLAEENKALTAERNKLESDAKKLQEEQTKVEASLKKKSAALEKDAPRLRSKEIQAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNAIEAEYKAFQNKVSAIQKREADFGKKAEAFQKKADAFQEKLNKAQQEAGGMDPQAVQK
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QVVEEINATVKEVAKSKGYTLVLPPSVALYAEDETKDITEKVLEALKAKHPEIKIEQPVA
HHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCC
NPEVKAEEAKPATDAPQAETTKPEEAKK
CCCCCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MKKLFKAATVTAALATAGLAQASDTIGFVDPNYLLQNHPVAIDAAQKFEKFMKEGQSKFA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEHHHHHHHHHHHHHHHHHH
DEDKKLAEENKALTAERNKLESDAKKLQEEQTKVEASLKKKSAALEKDAPRLRSKEIQAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNAIEAEYKAFQNKVSAIQKREADFGKKAEAFQKKADAFQEKLNKAQQEAGGMDPQAVQK
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QVVEEINATVKEVAKSKGYTLVLPPSVALYAEDETKDITEKVLEALKAKHPEIKIEQPVA
HHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCC
NPEVKAEEAKPATDAPQAETTKPEEAKK
CCCCCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7642134; 11248100 [H]