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The map label for this gene is ybcM [H]

Identifier: 126176267

GI number: 126176267

Start: 4788282

End: 4789040

Strand: Reverse

Name: ybcM [H]

Synonym: Sbal_4081

Alternate gene names: 126176267

Gene position: 4789040-4788282 (Counterclockwise)

Preceding gene: 126176268

Following gene: 126176266

Centisome position: 93.4

GC content: 50.33

Gene sequence:

>759_bases
ATGATCCGTTTGTTTGAATATGATTCGAAGCAGGCACAATCTTTATCTCAAGTACCTGTGCATCAGCCGTCGATTATTCG
GGTTATCCATGGGGAAAAGTCTTTACTCTGGCAAGATGAATCCGTTTTGGTGGGCCAAGGTCAGTTACTGTTAATTCCTG
CGGGTTCGCATATCAGCTTTGTGAATCGGCCTTTTCTTGGGCGCTATCGGGCGGTGCAGTTATTACTCCCCCACGATTTG
CCCCAAGGCATTTTATCGAGCACGGCCGATTGGCGTGACCCTATGCCAGTCCAAAACGTATCGCGCGCGGTGGACTTAGC
TTGGAATGCGTTATTACAGAGTTTGAGCTTGTCTCTGGCTGATTCTGTTCAGCTGCATTATCTGGCTGCGTTACTGCTCA
GTTTGCCTGATAAACGCAGTGTGAACTGGTTGTATGGCCACACGCAACGCAGCGTGACTCAAGCGGCCTTGGCTTTGATG
AGCGTGAGTCCTTCGGCGCCATGGCAGCAGGAGGAGATTGCCGACAAGTTACACATGAGCACGGCCAGCCTTAGGCGTAA
ATTGGTGTTAGAAGACACCAGTTTTAGGCAGTTGTTAGTCGAAGTCCGGCTGAGCCATGGTTTGGCCATGCTGCAAAACT
CGGGCGAGCCATTACTACAAGTGGCCTTAGCCTGTGGTTATCAATCGGCGGAAAAGTTTTCCTTACGTTTTAAGCAACAA
TTTGGCCTGACCCCTGCGGCTTATCGTCGTACACTGTGA

Upstream 100 bases:

>100_bases
CCCTGCATTATTAGGCTTTATGCTCAGAGCACAAGCCTTAGGTAGCGCCAAGTTGACTGCGGTATATAACCGATAATCCA
TTGATAATTAGGCTGGTGTC

Downstream 100 bases:

>100_bases
GGAGGAATAGATTGATACTCAAACAATCTCAAGCTGCAGGAGCGATATGATGGCGGATGAGCAATTTACCGACAGCGGAT
TTTGGAACAAGATTAAACTC

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MIRLFEYDSKQAQSLSQVPVHQPSIIRVIHGEKSLLWQDESVLVGQGQLLLIPAGSHISFVNRPFLGRYRAVQLLLPHDL
PQGILSSTADWRDPMPVQNVSRAVDLAWNALLQSLSLSLADSVQLHYLAALLLSLPDKRSVNWLYGHTQRSVTQAALALM
SVSPSAPWQQEEIADKLHMSTASLRRKLVLEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQ
FGLTPAAYRRTL

Sequences:

>Translated_252_residues
MIRLFEYDSKQAQSLSQVPVHQPSIIRVIHGEKSLLWQDESVLVGQGQLLLIPAGSHISFVNRPFLGRYRAVQLLLPHDL
PQGILSSTADWRDPMPVQNVSRAVDLAWNALLQSLSLSLADSVQLHYLAALLLSLPDKRSVNWLYGHTQRSVTQAALALM
SVSPSAPWQQEEIADKLHMSTASLRRKLVLEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQ
FGLTPAAYRRTL
>Mature_252_residues
MIRLFEYDSKQAQSLSQVPVHQPSIIRVIHGEKSLLWQDESVLVGQGQLLLIPAGSHISFVNRPFLGRYRAVQLLLPHDL
PQGILSSTADWRDPMPVQNVSRAVDLAWNALLQSLSLSLADSVQLHYLAALLLSLPDKRSVNWLYGHTQRSVTQAALALM
SVSPSAPWQQEEIADKLHMSTASLRRKLVLEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQ
FGLTPAAYRRTL

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=234, Percent_Identity=28.2051282051282, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789933, Length=228, Percent_Identity=25.4385964912281, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787776, Length=95, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28182; Mature: 28182

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLFEYDSKQAQSLSQVPVHQPSIIRVIHGEKSLLWQDESVLVGQGQLLLIPAGSHISF
CEEEEECCCHHHHHHHCCCCCCCCEEEEEECCCCEEECCCCEEEECCCEEEEECCCCCHH
VNRPFLGRYRAVQLLLPHDLPQGILSSTADWRDPMPVQNVSRAVDLAWNALLQSLSLSLA
HCCCCCCHHHHEEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DSVQLHYLAALLLSLPDKRSVNWLYGHTQRSVTQAALALMSVSPSAPWQQEEIADKLHMS
HHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
TASLRRKLVLEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQ
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH
FGLTPAAYRRTL
HCCCHHHHHCCC
>Mature Secondary Structure
MIRLFEYDSKQAQSLSQVPVHQPSIIRVIHGEKSLLWQDESVLVGQGQLLLIPAGSHISF
CEEEEECCCHHHHHHHCCCCCCCCEEEEEECCCCEEECCCCEEEECCCEEEEECCCCCHH
VNRPFLGRYRAVQLLLPHDLPQGILSSTADWRDPMPVQNVSRAVDLAWNALLQSLSLSLA
HCCCCCCHHHHEEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DSVQLHYLAALLLSLPDKRSVNWLYGHTQRSVTQAALALMSVSPSAPWQQEEIADKLHMS
HHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
TASLRRKLVLEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQ
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH
FGLTPAAYRRTL
HCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]