Click here to switch to the map view.

The map label for this gene is ybcL [H]

Identifier: 126176268

GI number: 126176268

Start: 4789065

End: 4789604

Strand: Reverse

Name: ybcL [H]

Synonym: Sbal_4082

Alternate gene names: 126176268

Gene position: 4789604-4789065 (Counterclockwise)

Preceding gene: 126176273

Following gene: 126176267

Centisome position: 93.41

GC content: 51.11

Gene sequence:

>540_bases
ATGAATAAATGGTGGCTAGGGGCGAGTTTAGTATTGGGCTTATTTGGACAGGCACATGCTATGACGTTAACGAGCAAAGA
TATGAGCGAGGGCAATAAACTCACATCGCAATTAGTATTTAATGGTTTCGGTTGCCAAGGTGAAAACATTTCGCCGCAAC
TGACTTGGACTGAAGTACCTGCGGGGACGAAAGCGTTTGCGGTGACGGCTTATGATCCTGATGCGCCAACGGGCAGCGGT
TGGTGGCACTGGGCGGTATATAACTTACCCGCAGCGCAAACATCATTGGCGCAAGGCGCGGGCTCGCATGCTGATGCACT
GCCCAAAGGCGCTATTGCTTTGAAGAACGACTTCGGCACCACAGACTTTGGTGGCGCTTGTCCGCCCGAAGGTCATGGCG
TACACAGGTATGAATTCACTGTGTGGGCATTGCCGAGTGCATTAGATCTGCCAAAGGACGCTAGCCCTGCATTATTAGGC
TTTATGCTCAGAGCACAAGCCTTAGGTAGCGCCAAGTTGACTGCGGTATATAACCGATAA

Upstream 100 bases:

>100_bases
ACATTTGAGCATTTGGGGCAGAAAGTTGCCGTTTTAGGGCAGATGTGATCTTTTGGATTGACGTAGATTAGTCAGGTCGA
AACATCAATGGGAGATAGAC

Downstream 100 bases:

>100_bases
TCCATTGATAATTAGGCTGGTGTCATGATCCGTTTGTTTGAATATGATTCGAAGCAGGCACAATCTTTATCTCAAGTACC
TGTGCATCAGCCGTCGATTA

Product: PEBP family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNKWWLGASLVLGLFGQAHAMTLTSKDMSEGNKLTSQLVFNGFGCQGENISPQLTWTEVPAGTKAFAVTAYDPDAPTGSG
WWHWAVYNLPAAQTSLAQGAGSHADALPKGAIALKNDFGTTDFGGACPPEGHGVHRYEFTVWALPSALDLPKDASPALLG
FMLRAQALGSAKLTAVYNR

Sequences:

>Translated_179_residues
MNKWWLGASLVLGLFGQAHAMTLTSKDMSEGNKLTSQLVFNGFGCQGENISPQLTWTEVPAGTKAFAVTAYDPDAPTGSG
WWHWAVYNLPAAQTSLAQGAGSHADALPKGAIALKNDFGTTDFGGACPPEGHGVHRYEFTVWALPSALDLPKDASPALLG
FMLRAQALGSAKLTAVYNR
>Mature_179_residues
MNKWWLGASLVLGLFGQAHAMTLTSKDMSEGNKLTSQLVFNGFGCQGENISPQLTWTEVPAGTKAFAVTAYDPDAPTGSG
WWHWAVYNLPAAQTSLAQGAGSHADALPKGAIALKNDFGTTDFGGACPPEGHGVHRYEFTVWALPSALDLPKDASPALLG
FMLRAQALGSAKLTAVYNR

Specific function: Unknown

COG id: COG1881

COG function: function code R; Phospholipid-binding protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0098 family [H]

Homologues:

Organism=Escherichia coli, GI1786757, Length=164, Percent_Identity=52.4390243902439, Blast_Score=176, Evalue=9e-46,
Organism=Escherichia coli, GI1786990, Length=159, Percent_Identity=52.2012578616352, Blast_Score=166, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008914
- InterPro:   IPR005247 [H]

Pfam domain/function: PF01161 PBP [H]

EC number: NA

Molecular weight: Translated: 18936; Mature: 18936

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKWWLGASLVLGLFGQAHAMTLTSKDMSEGNKLTSQLVFNGFGCQGENISPQLTWTEVP
CCCEECHHHHHHHHHCCCEEEEEECCCHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEECC
AGTKAFAVTAYDPDAPTGSGWWHWAVYNLPAAQTSLAQGAGSHADALPKGAIALKNDFGT
CCCCEEEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCCCEEEEECCCCC
TDFGGACPPEGHGVHRYEFTVWALPSALDLPKDASPALLGFMLRAQALGSAKLTAVYNR
CCCCCCCCCCCCCCEEEEEEEEECCCHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
>Mature Secondary Structure
MNKWWLGASLVLGLFGQAHAMTLTSKDMSEGNKLTSQLVFNGFGCQGENISPQLTWTEVP
CCCEECHHHHHHHHHCCCEEEEEECCCHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEECC
AGTKAFAVTAYDPDAPTGSGWWHWAVYNLPAAQTSLAQGAGSHADALPKGAIALKNDFGT
CCCCEEEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHCCCCCCCCCCCCEEEEECCCCC
TDFGGACPPEGHGVHRYEFTVWALPSALDLPKDASPALLGFMLRAQALGSAKLTAVYNR
CCCCCCCCCCCCCCEEEEEEEEECCCHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 11439028 [H]