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The map label for this gene is yddE [C]

Identifier: 126176257

GI number: 126176257

Start: 4776680

End: 4777546

Strand: Reverse

Name: yddE [C]

Synonym: Sbal_4071

Alternate gene names: 126176257

Gene position: 4777546-4776680 (Counterclockwise)

Preceding gene: 126176258

Following gene: 126176256

Centisome position: 93.18

GC content: 42.33

Gene sequence:

>867_bases
ATGAAAGTTGAAGCTTATTTGGTTAATTCCTTTACTGCCAATGGAAGCGGAGGAAACCCTGCTGGCGTAGTGTTGAACGC
CGACAATCTGTCTAACGAAGCAAAATTAGCAATAGCACAAGCCGTTGGTTATTCAGAAACTGCCTTTGTTTCTCAAGATG
ACGAAGTCGACTTTGAGTTGTCTTTTTTTACCATAACGGGTGAAGTTGATTTCTGTGGTCACGCAACATTAGCGGCATTT
TCAACAATGCATCAAAAAGGGATGGTAGCTGAAGGGCAATATGTGCAAAGGACTAAAGCGGGTTTACTTACCGTAACTAT
AGAGTCTAATGGCAATATAGTGATGGAGCTGAAGTTACCTGAATACCTTGGGATGTTTAGTTACGAGGCAATATCAGAGT
TAATTGGCATTGATCCGGCAGTACTAGAGTCAACTCAGTTACCTATTGAGGTTATTTCAACAGGCTTGCCTGATATTATT
GTTCCAGTGCCATGTGGGTATCTAGATAGAATCCAAGTGAATGAAAGTTTGCTCAGTGACTTCTGTAAAAAACATGATGT
TATTGGTATTCATGCTTTTGAATTATGTGATGAAAACAGCGGGTTGACAGCGAGTTGTCGGAATTTTGCTCCTTTGTTTG
GTATTCCTGAAGAGTCCGCTACGGGGAGTGCTAGTGGAGCATTAGCATGTTATCTAACCAAGCACCTTGGCGGTGAACAT
ACGAGTCGTTTTACTTTCGAGCAGGGCAGGGCAATGGACTGTATTTCAATAATTACGGCGTCAGTTACGTCGAAGGAGCA
GGATATTCTCAAAGTTATGGTTGGTGGATTTGCGCATGAGGTTGGGCTGCAGGAAATCTCCGTATAA

Upstream 100 bases:

>100_bases
TGGCAACGGCCATAGTTGAGATTGAGTCAACACGCGATTTATACCCTGCTATCAGCGCAACGCATAAATACTAAGACGGT
ATACGGAGAAATTGATATTG

Downstream 100 bases:

>100_bases
CAAATAATTTAAGCAAATCCGTAACGCTTGGCGCTATGGGATTGCAGTAAGTTTGAGAGATGTGCAGCGACTTGGTGGAA
ATACTTATTTGGGGAGAAGC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MKVEAYLVNSFTANGSGGNPAGVVLNADNLSNEAKLAIAQAVGYSETAFVSQDDEVDFELSFFTITGEVDFCGHATLAAF
STMHQKGMVAEGQYVQRTKAGLLTVTIESNGNIVMELKLPEYLGMFSYEAISELIGIDPAVLESTQLPIEVISTGLPDII
VPVPCGYLDRIQVNESLLSDFCKKHDVIGIHAFELCDENSGLTASCRNFAPLFGIPEESATGSASGALACYLTKHLGGEH
TSRFTFEQGRAMDCISIITASVTSKEQDILKVMVGGFAHEVGLQEISV

Sequences:

>Translated_288_residues
MKVEAYLVNSFTANGSGGNPAGVVLNADNLSNEAKLAIAQAVGYSETAFVSQDDEVDFELSFFTITGEVDFCGHATLAAF
STMHQKGMVAEGQYVQRTKAGLLTVTIESNGNIVMELKLPEYLGMFSYEAISELIGIDPAVLESTQLPIEVISTGLPDII
VPVPCGYLDRIQVNESLLSDFCKKHDVIGIHAFELCDENSGLTASCRNFAPLFGIPEESATGSASGALACYLTKHLGGEH
TSRFTFEQGRAMDCISIITASVTSKEQDILKVMVGGFAHEVGLQEISV
>Mature_288_residues
MKVEAYLVNSFTANGSGGNPAGVVLNADNLSNEAKLAIAQAVGYSETAFVSQDDEVDFELSFFTITGEVDFCGHATLAAF
STMHQKGMVAEGQYVQRTKAGLLTVTIESNGNIVMELKLPEYLGMFSYEAISELIGIDPAVLESTQLPIEVISTGLPDII
VPVPCGYLDRIQVNESLLSDFCKKHDVIGIHAFELCDENSGLTASCRNFAPLFGIPEESATGSASGALACYLTKHLGGEH
TSRFTFEQGRAMDCISIITASVTSKEQDILKVMVGGFAHEVGLQEISV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=259, Percent_Identity=29.7297297297297, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI74316009, Length=254, Percent_Identity=29.9212598425197, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI1787737, Length=294, Percent_Identity=31.9727891156463, Blast_Score=117, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI17542158, Length=315, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17542152, Length=315, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30763; Mature: 30763

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVEAYLVNSFTANGSGGNPAGVVLNADNLSNEAKLAIAQAVGYSETAFVSQDDEVDFEL
CCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCHHEEEEHHCCCCCEEEECCCCCCEEEE
SFFTITGEVDFCGHATLAAFSTMHQKGMVAEGQYVQRTKAGLLTVTIESNGNIVMELKLP
EEEEEECCEECCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEEECCCCEEEEEECH
EYLGMFSYEAISELIGIDPAVLESTQLPIEVISTGLPDIIVPVPCGYLDRIQVNESLLSD
HHHCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHCCCCCEEEECCCCCCCCEEECHHHHHH
FCKKHDVIGIHAFELCDENSGLTASCRNFAPLFGIPEESATGSASGALACYLTKHLGGEH
HHHHCCEEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCCC
TSRFTFEQGRAMDCISIITASVTSKEQDILKVMVGGFAHEVGLQEISV
CCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MKVEAYLVNSFTANGSGGNPAGVVLNADNLSNEAKLAIAQAVGYSETAFVSQDDEVDFEL
CCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCHHEEEEHHCCCCCEEEECCCCCCEEEE
SFFTITGEVDFCGHATLAAFSTMHQKGMVAEGQYVQRTKAGLLTVTIESNGNIVMELKLP
EEEEEECCEECCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEEEEECCCCEEEEEECH
EYLGMFSYEAISELIGIDPAVLESTQLPIEVISTGLPDIIVPVPCGYLDRIQVNESLLSD
HHHCHHHHHHHHHHHCCCHHHHCCCCCCHHHHHCCCCCEEEECCCCCCCCEEECHHHHHH
FCKKHDVIGIHAFELCDENSGLTASCRNFAPLFGIPEESATGSASGALACYLTKHLGGEH
HHHHCCEEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCCC
TSRFTFEQGRAMDCISIITASVTSKEQDILKVMVGGFAHEVGLQEISV
CCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]