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The map label for this gene is ydeL [H]

Identifier: 126176258

GI number: 126176258

Start: 4778008

End: 4779384

Strand: Reverse

Name: ydeL [H]

Synonym: Sbal_4072

Alternate gene names: 126176258

Gene position: 4779384-4778008 (Counterclockwise)

Preceding gene: 126176262

Following gene: 126176257

Centisome position: 93.21

GC content: 46.48

Gene sequence:

>1377_bases
ATGACTAAAGTCTTGGCCTATAAGCAAGTCTATCAACGCATTCATACTGCGATTTTGCAAGGGATACTCAAGTCCGGTGA
GCGGCTCCCCTCTGCTCGTACCCTTGCCAAGGAAATGGGCGTCGCACGCGGAACGGTAGAGGAAGGTTATGCCATCTTAA
AAGCAGAAGGCTACATTGAGTCTAAAGGCCAAGCTGGTACTGTGGTCAGTCGACATTTTTTCGAGCTAGCTAAGGTCCAA
ACCATTCAGCTAAACACTCGCCAGCCCGGTTTCCACACTGAAATAGAAACTTCTGTCGTACTTCCCTTTCAGCTAGGTAT
TCCAGCGTTAGATGCCTTTCCAAGGCAAGCTTGGTCAAGAATGGCGGCAAGATGCGCCCGTAACATCCAGATGGATGATC
TGATTTATCCTTCTGTTTATGGCAGCCCGCAACTCAGGATAGCCATAGCGCAGTATTTACAGCTTTCCCGAGGGGTAAAA
TGTGAGCCCACCCAAGTGTTTATCACCTCTGGATATGTCCATTCCATTAACTGGATAGCCCATGTGCTGCTATCGCCACA
AGCTAATGTCGCCGTAGAAGATCCCGGTTACCCACTGACTCGGAAAATCTTGGCGAATCAGAATCTTAATATTGTGCCAA
TCGTTGTCGATAAAGAAGGCATAAATTTACCGCCCAACACCCAAGCGGACGCGGTGATTGTGACCCCAGCTCACCAGAGT
CCAACTTGCGTGTCCTTATCGCTCCAGCGTCGACAGGAATTACTCAGTTGGGCAGAGACTAACCAAAGTTGGATTATTGA
AGATGATTATGACGGTGAGTATCGCCATACAGGTCAGCCGCTACCGGCGTTAAAAAGTTTGGACAACTTTGATAGGGTTA
TTTATTCAGGCACCTTCAGTAAGGTGCTTTTCCCCAGTTTGCGAATGGCTTATATAGTGGTGCCCAAAAGCAAAGTGTCA
GCGTTCGAGCAATGCTCTGAACTGTATGCCGGCAATGTTTCGGGGCTTATCCAAGCTTGCGTGTTGGCTTTTATGCAGGA
AGGCCATCTTTCCCGGCATATTCAACGGATGAAAAATCTATATAGAGAGCGCAGAGAATTAACCGCCAGAATCTTTAAAC
AAGTGTTAGGCGATAAGGTATCGATTGAACCACAACCGGGTGGAATGTATATGATGGTAAAGTTGACCGACCCCAATATT
GATGATGCAGAGCTGGCCAACAAGATGATGAAGGCAGGGTTATTTGCTCAAGGGTTATCGCAATGGTCATCAAGACCCGT
TCACCCAAGCTTAATTTTAAGTTTCACCAATATTAGTACTGAAGAAGAATGTCGAACCTTAGTTTCTCGCTTCAAAGATA
TTTTAGGGCAATGCTAA

Upstream 100 bases:

>100_bases
CAAATACCCATGGCTCATAATAAGAGCCATAAAGTTATTTTTTTAGTGGACCATGTTCGCAGGTGTGTGTCGCTTACTAC
TGAGTTCTAGGAGCAGAGGA

Downstream 100 bases:

>100_bases
TTGTACGTGAGAGAGTTATAGAAATGGCTTGATTTTATTATGGAGAAATAAACTGAAGTGGTCGCGAAAGTTGAGCTTAG
TTGAAAACTATGCGTCACAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MTKVLAYKQVYQRIHTAILQGILKSGERLPSARTLAKEMGVARGTVEEGYAILKAEGYIESKGQAGTVVSRHFFELAKVQ
TIQLNTRQPGFHTEIETSVVLPFQLGIPALDAFPRQAWSRMAARCARNIQMDDLIYPSVYGSPQLRIAIAQYLQLSRGVK
CEPTQVFITSGYVHSINWIAHVLLSPQANVAVEDPGYPLTRKILANQNLNIVPIVVDKEGINLPPNTQADAVIVTPAHQS
PTCVSLSLQRRQELLSWAETNQSWIIEDDYDGEYRHTGQPLPALKSLDNFDRVIYSGTFSKVLFPSLRMAYIVVPKSKVS
AFEQCSELYAGNVSGLIQACVLAFMQEGHLSRHIQRMKNLYRERRELTARIFKQVLGDKVSIEPQPGGMYMMVKLTDPNI
DDAELANKMMKAGLFAQGLSQWSSRPVHPSLILSFTNISTEEECRTLVSRFKDILGQC

Sequences:

>Translated_458_residues
MTKVLAYKQVYQRIHTAILQGILKSGERLPSARTLAKEMGVARGTVEEGYAILKAEGYIESKGQAGTVVSRHFFELAKVQ
TIQLNTRQPGFHTEIETSVVLPFQLGIPALDAFPRQAWSRMAARCARNIQMDDLIYPSVYGSPQLRIAIAQYLQLSRGVK
CEPTQVFITSGYVHSINWIAHVLLSPQANVAVEDPGYPLTRKILANQNLNIVPIVVDKEGINLPPNTQADAVIVTPAHQS
PTCVSLSLQRRQELLSWAETNQSWIIEDDYDGEYRHTGQPLPALKSLDNFDRVIYSGTFSKVLFPSLRMAYIVVPKSKVS
AFEQCSELYAGNVSGLIQACVLAFMQEGHLSRHIQRMKNLYRERRELTARIFKQVLGDKVSIEPQPGGMYMMVKLTDPNI
DDAELANKMMKAGLFAQGLSQWSSRPVHPSLILSFTNISTEEECRTLVSRFKDILGQC
>Mature_457_residues
TKVLAYKQVYQRIHTAILQGILKSGERLPSARTLAKEMGVARGTVEEGYAILKAEGYIESKGQAGTVVSRHFFELAKVQT
IQLNTRQPGFHTEIETSVVLPFQLGIPALDAFPRQAWSRMAARCARNIQMDDLIYPSVYGSPQLRIAIAQYLQLSRGVKC
EPTQVFITSGYVHSINWIAHVLLSPQANVAVEDPGYPLTRKILANQNLNIVPIVVDKEGINLPPNTQADAVIVTPAHQSP
TCVSLSLQRRQELLSWAETNQSWIIEDDYDGEYRHTGQPLPALKSLDNFDRVIYSGTFSKVLFPSLRMAYIVVPKSKVSA
FEQCSELYAGNVSGLIQACVLAFMQEGHLSRHIQRMKNLYRERRELTARIFKQVLGDKVSIEPQPGGMYMMVKLTDPNID
DAELANKMMKAGLFAQGLSQWSSRPVHPSLILSFTNISTEEECRTLVSRFKDILGQC

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=373, Percent_Identity=22.5201072386059, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI33469970, Length=373, Percent_Identity=22.5201072386059, Blast_Score=70, Evalue=6e-12,
Organism=Escherichia coli, GI1787710, Length=418, Percent_Identity=25.5980861244019, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790797, Length=423, Percent_Identity=24.822695035461, Blast_Score=106, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51238; Mature: 51107

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVLAYKQVYQRIHTAILQGILKSGERLPSARTLAKEMGVARGTVEEGYAILKAEGYIE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHCEEEEEECCCEE
SKGQAGTVVSRHFFELAKVQTIQLNTRQPGFHTEIETSVVLPFQLGIPALDAFPRQAWSR
CCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
MAARCARNIQMDDLIYPSVYGSPQLRIAIAQYLQLSRGVKCEPTQVFITSGYVHSINWIA
HHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHH
HVLLSPQANVAVEDPGYPLTRKILANQNLNIVPIVVDKEGINLPPNTQADAVIVTPAHQS
HHHCCCCCCEEEECCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCC
PTCVSLSLQRRQELLSWAETNQSWIIEDDYDGEYRHTGQPLPALKSLDNFDRVIYSGTFS
CCEEEHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
KVLFPSLRMAYIVVPKSKVSAFEQCSELYAGNVSGLIQACVLAFMQEGHLSRHIQRMKNL
HHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YRERRELTARIFKQVLGDKVSIEPQPGGMYMMVKLTDPNIDDAELANKMMKAGLFAQGLS
HHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
QWSSRPVHPSLILSFTNISTEEECRTLVSRFKDILGQC
HHCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKVLAYKQVYQRIHTAILQGILKSGERLPSARTLAKEMGVARGTVEEGYAILKAEGYIE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHCEEEEEECCCEE
SKGQAGTVVSRHFFELAKVQTIQLNTRQPGFHTEIETSVVLPFQLGIPALDAFPRQAWSR
CCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
MAARCARNIQMDDLIYPSVYGSPQLRIAIAQYLQLSRGVKCEPTQVFITSGYVHSINWIA
HHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHH
HVLLSPQANVAVEDPGYPLTRKILANQNLNIVPIVVDKEGINLPPNTQADAVIVTPAHQS
HHHCCCCCCEEEECCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCC
PTCVSLSLQRRQELLSWAETNQSWIIEDDYDGEYRHTGQPLPALKSLDNFDRVIYSGTFS
CCEEEHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
KVLFPSLRMAYIVVPKSKVSAFEQCSELYAGNVSGLIQACVLAFMQEGHLSRHIQRMKNL
HHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YRERRELTARIFKQVLGDKVSIEPQPGGMYMMVKLTDPNIDDAELANKMMKAGLFAQGLS
HHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
QWSSRPVHPSLILSFTNISTEEECRTLVSRFKDILGQC
HHCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]