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The map label for this gene is tapC [H]

Identifier: 126176022

GI number: 126176022

Start: 4502077

End: 4503297

Strand: Reverse

Name: tapC [H]

Synonym: Sbal_3831

Alternate gene names: 126176022

Gene position: 4503297-4502077 (Counterclockwise)

Preceding gene: 126176023

Following gene: 126176021

Centisome position: 87.83

GC content: 48.81

Gene sequence:

>1221_bases
ATGCCGATTTATCAATACCGTGGACGCAGTGGTCAAGGTCAATCCGTTACAGGGCAATTGGATGCGGCATCGGAAAGTGC
CGCTGCTGACATGCTATTGGCGCGGGGGATTATCCCCCTTGAGGTCAAAGTCGCCAAAGTGGTTAAGTCATTCTCACTGA
CTAAGTTATTTGGTGGAAAAGTCGCGTTAGAAGAATTACAGATTTTTACTCGGCAAATGTACTCCTTGACCCGTTCTGGC
ATCCCGATTTTGCGGGCGATTGCGGGCTTGTCTGAAACGGCGCATTCCCAGCGGATGAAAGATGCGCTCAATGATATTTC
TGAGCAGCTCACCGCAGGCCGACCCTTATCATCATCCATGAATCAACATCCCGATGTATTTGATTCCTTGTTTGTTTCTA
TGGTGCACGTGGGCGAAAACACAGGTAAGTTAGAAGATGCCTTTATTCAGCTGTCGGGCTATATCGAGCGTGAGCAGGAA
ACACGGCGGCGAATTAAATCGGCCATGCGTTATCCCATGTTTGTCTTGATTGCGATTGCGCTCGCTATGGTGATCCTCAA
TATTATGGTGATCCCTAAGTTTGCCGAGATGTTTTCCCGCTTTGGCGCCGACTTACCTTGGGCGACAAAAGTGCTGATTG
GTACATCGAATCTGTTTGTGAATTATTGGGCGCTGATGTTGGTGGCGCTGATCGGCACTATTATCGGCATCCGTTATTGG
CACCATACGGAAAAGGGCGAGAAACAGTGGGATAAGTGGAAGTTACACATCCCTGCCGTGGGATCGATTATCGAGCGCTC
GACGTTAGCCCGTTATTGTCGCAGTTTCTCTATGATGCTGAGCGCTGGCGTGCCGATGACGCAGGCCTTAAGTTTAGTGG
CTGATGCGGTAGATAATGCCTACATGCACGACAAAATAGTCGGTATGCGCCGTGGGATTGAGTCTGGCGACTCTATGTTG
AGGGTATCGAATCAGAGTAAGTTATTTACGCCGCTGGTGCTGCAAATGGTGGCAGTGGGTGAAGAAACGGGGCAAATCGA
TCAATTACTCAATGATGCGGCAGACTTCTATGAGGGCGAAGTAGACTATGATTTAAAGAACCTCACCGCTAAATTGGAGC
CTATTTTGATCGGTTTTGTGGCCGTGATTGTACTCGTGTTGGCCTTAGGGATATACCTGCCCATGTGGGATATGCTTAAT
GTGGTCAAGGGCGGTAAATAA

Upstream 100 bases:

>100_bases
CGACCATTGAAGAGGTGGCTAAGCTGGTAGAGGATGTGAGTGAATCACAGATACCTTTGTCGAAGGATATTATTAGCCAA
CAAGGCGTTGAGGCGTAATT

Downstream 100 bases:

>100_bases
TCGATATGGATAATGTTTATCTTCTATCTTATGTGTGGGGCTGAGGTTTAAATGCAGACTCAGCAAAAGGCAGAAAGCGA
TCTATTACGCATCTATGGGC

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MPIYQYRGRSGQGQSVTGQLDAASESAAADMLLARGIIPLEVKVAKVVKSFSLTKLFGGKVALEELQIFTRQMYSLTRSG
IPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQE
TRRRIKSAMRYPMFVLIAIALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALMLVALIGTIIGIRYW
HHTEKGEKQWDKWKLHIPAVGSIIERSTLARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRRGIESGDSML
RVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAVIVLVLALGIYLPMWDMLN
VVKGGK

Sequences:

>Translated_406_residues
MPIYQYRGRSGQGQSVTGQLDAASESAAADMLLARGIIPLEVKVAKVVKSFSLTKLFGGKVALEELQIFTRQMYSLTRSG
IPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQE
TRRRIKSAMRYPMFVLIAIALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALMLVALIGTIIGIRYW
HHTEKGEKQWDKWKLHIPAVGSIIERSTLARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRRGIESGDSML
RVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAVIVLVLALGIYLPMWDMLN
VVKGGK
>Mature_405_residues
PIYQYRGRSGQGQSVTGQLDAASESAAADMLLARGIIPLEVKVAKVVKSFSLTKLFGGKVALEELQIFTRQMYSLTRSGI
PILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSMNQHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQET
RRRIKSAMRYPMFVLIAIALAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALMLVALIGTIIGIRYWH
HTEKGEKQWDKWKLHIPAVGSIIERSTLARYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDKIVGMRRGIESGDSMLR
VSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVAVIVLVLALGIYLPMWDMLNV
VKGGK

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=396, Percent_Identity=27.5252525252525, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1786295, Length=406, Percent_Identity=24.6305418719212, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45044; Mature: 44913

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PIYQYRGRSGQGQSVTGQLDAASESAAADMLLARGIIPLEVKVAKVVKSFSLTKLFGGK
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCH
VALEELQIFTRQMYSLTRSGIPILRAIAGLSETAHSQRMKDALNDISEQLTAGRPLSSSM
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
NQHPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSAMRYPMFVLIAIA
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAMVILNIMVIPKFAEMFSRFGADLPWATKVLIGTSNLFVNYWALMLVALIGTIIGIRYW
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
HHTEKGEKQWDKWKLHIPAVGSIIERSTLARYCRSFSMMLSAGVPMTQALSLVADAVDNA
HCCCCCHHCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YMHDKIVGMRRGIESGDSMLRVSNQSKLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGE
HHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
VDYDLKNLTAKLEPILIGFVAVIVLVLALGIYLPMWDMLNVVKGGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]