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The map label for this gene is intD [C]

Identifier: 126175915

GI number: 126175915

Start: 4352962

End: 4354092

Strand: Reverse

Name: intD [C]

Synonym: Sbal_3721

Alternate gene names: 126175915

Gene position: 4354092-4352962 (Counterclockwise)

Preceding gene: 126175918

Following gene: 126175914

Centisome position: 84.92

GC content: 46.51

Gene sequence:

>1131_bases
ATGCCGAGTATTAAACTACAACAGTCAATGATTGATAATTTACCCACACCACAGAAAATAACGGTGTTTTACGATAAATA
TTTTCCCGCTTTTTTTATGCGAGCCTATCCCTCTGGTATTCGGTGTTATTACGTTCGTTTCCAGTATCAAGGCTTGCGAC
AACTTCATGTTATCGGCAATGCAAATGATATCACGCTTGATGATGCGCGACTTGAGGCAAGAAAGCACATAGATGCGTTA
CGTTATGGGGTGGTGCGTGAACCTGCGCCCTCTCTTACGCTCTGTGCGTTCGCAGAAGAGTTTTTTCCAAGATATGCCCG
TCATTGGAAGCCCTCAACATTACTCAATAGCCAGCGTGGTTTTACGCGGCATATAGCCCCTGTGTTGGGTGATGTTCCGC
TTGCTGCGTTGACACGACAACACATAGAACAGTGGTTTGATGGTATGCATGCCTCGAAAGGCATGGCTAATCGCTTGTTG
CCGTTGTTGTCGGTAATGATGCAGCAAGCCGAAGTATATGAGTATCGTCCAGCGCAAAGTAACCCTTGCAAAGGCTTTAA
GCGGTATAAGTCTACGCACAGTGAGCGTTATTTATCTGAGGAAGAACTCAAGCGGCTATGGTTGGCTTTAGATAGCCACG
AAAAAGCGTCACCCGTTGCGGTGATGGTTTTACGGTTACTAATCTTAACGGGTTGTCGCTGTAACGAAGTGTGCTCCGTT
AAATGGGCTGATTATCGGCAAGGGCATTGGTATTTGCCCGACAGTAAAACAGGCGCGAAAACGGTGTTTCTGTCTTCCTT
TGCGCGGGAGTTGCTGAGTGATTGGCCACAAGTAAGCGAGCATCTTTTTTGGCATCAATCACCTTCACAGCCGTTTACCC
CTGCTCGTTTAGACCGATTTTGGCGACCATTTCGCGAGACAATTCATCTAAATGATGTTCGCATCCATGACTTACGCCAC
ACCTACGCCAGTATTGCAGTAAAGCACAATATCAACATCCTCACGATTGGCCGCTTATTAGGGCATGCCTTACCTGAAAC
AACCTTAAAGTACACACACCTTGCTAAACGTGATGTTCAACAGGCGGCAAATGTCGTTTCTCAACTCATTGCTGGGGAGA
TGCAACGATGA

Upstream 100 bases:

>100_bases
TTTTCGCTCAGTGAAATTCAATGCGTTTTATATGTGTTTTTAGCCCGAAAATGGCTCGAAAACACCTCATGAATGCCACC
TTACTGAACGAGGAAAACCT

Downstream 100 bases:

>100_bases
AAACAGTGAAATTAACACAAGTGTTTATTCGGTCATTAGCCCGTCAAACACGCACTTACACCATTCAAGACAGTCTCTGT
CATGGCCTTGGCGTTAAAGT

Product: phage integrase family protein

Products: NA

Alternate protein names: Phage Integrase Family Protein; Integrase Family Protein; Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase Phage Integrase Family; Phage-Related Integrase; Phage Related Integrase; Prophage Integrase; Site-Specific Recombinase/Integrase; Tyrosine Type Site-Specific Recombinase; Prophage; Site Specific Recombinase; Integrase Protein; LOW QUALITY PROTEIN Phage Integrase; Tyrosine Recombinase XerC; DNA Integration/Recombination/Invertion Protein; Shufflon-Specific DNA Recombinase; Phage Integrase-Like Protein; Phage Integrase Family Site-Specific Recombinase; Tyrosine Site-Specific Integrase/Recombinase Protein; Phage Integrase Family

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MPSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDAL
RYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL
PLLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSV
KWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHLFWHQSPSQPFTPARLDRFWRPFRETIHLNDVRIHDLRH
TYASIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQQAANVVSQLIAGEMQR

Sequences:

>Translated_376_residues
MPSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDAL
RYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL
PLLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSV
KWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHLFWHQSPSQPFTPARLDRFWRPFRETIHLNDVRIHDLRH
TYASIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQQAANVVSQLIAGEMQR
>Mature_375_residues
PSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALR
YGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLP
LLSVMMQQAEVYEYRPAQSNPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSVK
WADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHLFWHQSPSQPFTPARLDRFWRPFRETIHLNDVRIHDLRHT
YASIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQQAANVVSQLIAGEMQR

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43620; Mature: 43489

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGN
CCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECC
ANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRG
CCCEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
FTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLPLLSVMMQQAEVYEYRPAQS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
NPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSV
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
KWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHLFWHQSPSQPFTPARLDRF
EECCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHH
WRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQ
HHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHH
QAANVVSQLIAGEMQR
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PSIKLQQSMIDNLPTPQKITVFYDKYFPAFFMRAYPSGIRCYYVRFQYQGLRQLHVIGN
CCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECC
ANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFFPRYARHWKPSTLLNSQRG
CCCEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
FTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLLPLLSVMMQQAEVYEYRPAQS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
NPCKGFKRYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSV
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
KWADYRQGHWYLPDSKTGAKTVFLSSFARELLSDWPQVSEHLFWHQSPSQPFTPARLDRF
EECCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHH
WRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQ
HHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHH
QAANVVSQLIAGEMQR
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA