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The map label for this gene is xerC [H]

Identifier: 126175914

GI number: 126175914

Start: 4351610

End: 4352965

Strand: Reverse

Name: xerC [H]

Synonym: Sbal_3720

Alternate gene names: 126175914

Gene position: 4352965-4351610 (Counterclockwise)

Preceding gene: 126175915

Following gene: 126175913

Centisome position: 84.9

GC content: 46.02

Gene sequence:

>1356_bases
ATGAAAACAGTGAAATTAACACAAGTGTTTATTCGGTCATTAGCCCGTCAAACACGCACTTACACCATTCAAGACAGTCT
CTGTCATGGCCTTGGCGTTAAAGTGATGCCCGATAAACCGATGCAGTACGTTATTAGCCGCCTTATTGATAATCGGACAC
GCACACGCATTCTTGCGCCAGTTAGTGCGCTAACGGTTAAAGCGGCACGGGAGAAAGCAACAGGACAACTTCAAGCATGG
CGAGAGGAGAATACTCAACCGAGCATGAGTGCTTCCCCCCGTTTTGACGTGTTTGTTGAACAAACATGGAAGCCGATGAT
TTTTGAACACTGGAAACCCAGTACAAAACGGTCAGTCTTACCCGCGCTGAATAGACGCTTGTTAGCTCATTTTGGCCGTT
ACCCGTTGCACATGATTAACCATAGGATGGTACAAGCATGGTTTGATGAGATTAGTAAAACGCGCAAAGGTGCCGCTAAC
CGTAACCTTGATACATTGCAATCCGTCTTCAAGTTAGCATTGAGGCAGGGGCATTGCCTGACGAACCCCTGTATTGGTAT
TCGGCAAAACAAAAGACGGGTATTAAATCGCTTTTTGAGTGTTGCTGAAATGCAGCGTTTATCTGTGGCGCTTGATGAAT
GTGAAGAGGTCGGCGGCAGTATTGCTCAATGTGCTGATATTCTGCGGCTGTTACTGCTAACAGGCTGCCGATTATCGGAA
ATCACCTTTTTAAAAGGGGAGTACGTGCGCGGCAATGAATTGCATTTACCTGACAGTAAAACAGGGGCAAAAGTGCTTTA
CATTGGTCAAGCCGCAGTTGACATATTAAGTCGCTATCACTGTAAGGCCAATACAGAACTTTTTCCGATGAAACAAGGCG
CTTCCACTTCGTTGGTACAGTCGCTATGGCTAAGGTTGCGAAAACAGATAGGGATTGAAGATGTAAGATTGCACGATTTA
CGGCATACCTTTGCAAGTTACGCTGTCATGGACGGATGCAGTATTCCGATGGTGGCCTCTTTACTGGGGCATAAAAAAGT
CACAATGACGTTACGATATACCCATGTTGGGGATGATAGCGTAGAGCAAGCCGCTGAGGTTATTGGGGCTGTCTTCAAAG
GCATTTTCACTCAGTCAGAGCCACTCAAACCCTATATACCTCAAACTAATGAGGCTCCCACGCCCGCCGTAAAAGTAAAG
CAAAAGCGTCTGCCAGAAAGAAAACCAACAGCGAAGCCAAAGCCTAAAGCGGTGAAAAAAGTGAAGCAGGTTAAACCATT
ACAGACACCGCCCTCTTTAACTAAAGAGGAGCTTCGCGCGATACAACGATTTAGGGACAGTAAGCTATTTTTGTAG

Upstream 100 bases:

>100_bases
CCTTACCTGAAACAACCTTAAAGTACACACACCTTGCTAAACGTGATGTTCAACAGGCGGCAAATGTCGTTTCTCAACTC
ATTGCTGGGGAGATGCAACG

Downstream 100 bases:

>100_bases
AGTTAAAATCTTCTTGAAAGTCATTTGGTTAGCTCAAGTATGTTAATTGCCAAAAATTAAGACTAGGTGCAAGTTGTAAA
TTTGTACCTAGTTATACATC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MKTVKLTQVFIRSLARQTRTYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAPVSALTVKAAREKATGQLQAW
REENTQPSMSASPRFDVFVEQTWKPMIFEHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAAN
RNLDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDL
RHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVK
QKRLPERKPTAKPKPKAVKKVKQVKPLQTPPSLTKEELRAIQRFRDSKLFL

Sequences:

>Translated_451_residues
MKTVKLTQVFIRSLARQTRTYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAPVSALTVKAAREKATGQLQAW
REENTQPSMSASPRFDVFVEQTWKPMIFEHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAAN
RNLDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDL
RHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVK
QKRLPERKPTAKPKPKAVKKVKQVKPLQTPPSLTKEELRAIQRFRDSKLFL
>Mature_451_residues
MKTVKLTQVFIRSLARQTRTYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAPVSALTVKAAREKATGQLQAW
REENTQPSMSASPRFDVFVEQTWKPMIFEHWKPSTKRSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAAN
RNLDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDL
RHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDSVEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVK
QKRLPERKPTAKPKPKAVKKVKQVKPLQTPPSLTKEELRAIQRFRDSKLFL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=233, Percent_Identity=27.0386266094421, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 51165; Mature: 51165

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVKLTQVFIRSLARQTRTYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAP
CCCHHHHHHHHHHHHHHHCEEEEHHHHHHHCCCEECCCCHHHHHHHHHHCCHHHHHHHHH
VSALTVKAAREKATGQLQAWREENTQPSMSASPRFDVFVEQTWKPMIFEHWKPSTKRSVL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHCCCCCHHHHHCCCCHHHHHH
PALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQSVFKLALRQGHCL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
TNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKQGASTSLVQ
EEEECCCCCCCCEEECCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
SLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEEECCCHH
VEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVKQKRLPERKPTAKPKPKAVKK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
VKQVKPLQTPPSLTKEELRAIQRFRDSKLFL
HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTVKLTQVFIRSLARQTRTYTIQDSLCHGLGVKVMPDKPMQYVISRLIDNRTRTRILAP
CCCHHHHHHHHHHHHHHHCEEEEHHHHHHHCCCEECCCCHHHHHHHHHHCCHHHHHHHHH
VSALTVKAAREKATGQLQAWREENTQPSMSASPRFDVFVEQTWKPMIFEHWKPSTKRSVL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHCCCCCHHHHHCCCCHHHHHH
PALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQSVFKLALRQGHCL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
TNPCIGIRQNKRRVLNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
ITFLKGEYVRGNELHLPDSKTGAKVLYIGQAAVDILSRYHCKANTELFPMKQGASTSLVQ
EEEECCCCCCCCEEECCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
SLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGDDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEEECCCHH
VEQAAEVIGAVFKGIFTQSEPLKPYIPQTNEAPTPAVKVKQKRLPERKPTAKPKPKAVKK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
VKQVKPLQTPPSLTKEELRAIQRFRDSKLFL
HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA