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The map label for this gene is ycaD [H]

Identifier: 126175840

GI number: 126175840

Start: 4266553

End: 4267995

Strand: Direct

Name: ycaD [H]

Synonym: Sbal_3645

Alternate gene names: 126175840

Gene position: 4266553-4267995 (Clockwise)

Preceding gene: 126175839

Following gene: 126175849

Centisome position: 83.21

GC content: 49.69

Gene sequence:

>1443_bases
ATGACTAATCCGCTGCGCACTTTCGCCTCTTTATATAGCACCACCTTGTTAATGGTACTGGCCGGCGGTTTGCTCACAAC
TTACCTTGGGCTCAGGCTCTCGGTGATGAACGTGCCACAGATATGGATAGGTGGCATGATGTCAGCCTATTATGTTGGCC
TTGTGGCGGGCTCTAAGATTGGTCATAGACTTATCGCCCAAGTGGGCCATATCCGCGCCTTCGTTGCCAGTGCAGGCATA
GTCGCGGCATCTGCATTGGGTCATGCACTCGTGGATGAGCTAGCAGTTTGGCTGCTCCTCAGGCTCGTTGTCGGCATGGG
CATGATGTGCCAATACATGGTGCTCGAAAGTTGGCTTAACGAACAAGCCGAAAGTAACCAAAGGGGCACAGTGTTCGCGA
GTTATATGATCGTATCTTACTTCGGCTTGATCTTGGGCCAAGGCGCAATCAGCATCTTCCCCGAATTAGGCCTTGAGCCA
TTACTGCTGATCGCGATTTGTTTCTCACTCTGTATCGTACCGATTTCACTCACGCGTCGTCTTCACCCTGCGCCTTTGGT
CCCAGCTCCACTCAAAATTGCCCATTACTGGAAAAAAGCGCCGCAGGCACTCACAACCATCGCGATTGGTAGCATGATAG
TGGGTTCGTTTTATGGTCTCGCGCCCGCCTATGCTAGTAACTTAGGTTTGCCGCCTGAAAAAGTCGCCACTTATATGACT
GCAACAATTTTAGCAGGATTACTGGCACAATGGCCGATGGGGAAACTGTCCGACATTATGTCCCGCAGTCGCCTTATTCG
TATCAACTGTATATTGCTTGGCATCTTAGCCTTAGCCATCGCCTTAACGCCCTATCATCCAGTGATTTCGCTGGTGATGA
CCTTCCTGTTTGGTATTTTAGGTTTCACCTTCTATCCACTTGCTACGGCACTGGCTAACTCACGAGTCGAACAGAATGAG
CGGGTCGGTTTATCTGCCACCATCTTATTAACCTTCGGCTTAGGGGCTAGTATCGGTCCATTGATCGCCTCAACGTTGAT
GCAATGGCTTGGTAACAGCATGTTATATGGCTTTATGTCTGCCTGTACCTTGATCCTGTTTGTGCGACTACGTTACGTGC
ATTCGCAGCAAAAAGTCGAAACCAATGTCACCCAAGATTACATAATGGCGACGGGCGACCTAGTCTCTTCACCACTGGCG
GCGGCGCTTGACCCAAGGGTTGATGTTGAATCGATTCAAGAGCATATGACGCCCAGTGCTAACCTAGATGAATCTGAGCA
TGATTTAGGGGCTGATGGCGTCGATGACGATATTATCGACGAAAATGACAGTGATGAGGAGCAACTCGCCTTCAGTTTCG
ATATCGAACAAGCAGAGCCAGAAGCCGTTCTAACGGATGAAGCCGATAGCCATCAGGTTAACCTAGACAAAGCACTGACA
TAA

Upstream 100 bases:

>100_bases
TTAATCAAGATTTACCAACAATTTGCAACACAACATAAACACCAACCCCTGATATACTCACGGTTTATTATCAATCTTGT
TTGTGTTTTCGGAGTTGTAT

Downstream 100 bases:

>100_bases
AAAGGCCAACAAAAAAGACCGATTAACTGTTTAAAGTTAATCGGTCTTTTATTACTGCTAATGCTAACTACAACAAATAG
TGACTGCAATAAGTCGTTAC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MTNPLRTFASLYSTTLLMVLAGGLLTTYLGLRLSVMNVPQIWIGGMMSAYYVGLVAGSKIGHRLIAQVGHIRAFVASAGI
VAASALGHALVDELAVWLLLRLVVGMGMMCQYMVLESWLNEQAESNQRGTVFASYMIVSYFGLILGQGAISIFPELGLEP
LLLIAICFSLCIVPISLTRRLHPAPLVPAPLKIAHYWKKAPQALTTIAIGSMIVGSFYGLAPAYASNLGLPPEKVATYMT
ATILAGLLAQWPMGKLSDIMSRSRLIRINCILLGILALAIALTPYHPVISLVMTFLFGILGFTFYPLATALANSRVEQNE
RVGLSATILLTFGLGASIGPLIASTLMQWLGNSMLYGFMSACTLILFVRLRYVHSQQKVETNVTQDYIMATGDLVSSPLA
AALDPRVDVESIQEHMTPSANLDESEHDLGADGVDDDIIDENDSDEEQLAFSFDIEQAEPEAVLTDEADSHQVNLDKALT

Sequences:

>Translated_480_residues
MTNPLRTFASLYSTTLLMVLAGGLLTTYLGLRLSVMNVPQIWIGGMMSAYYVGLVAGSKIGHRLIAQVGHIRAFVASAGI
VAASALGHALVDELAVWLLLRLVVGMGMMCQYMVLESWLNEQAESNQRGTVFASYMIVSYFGLILGQGAISIFPELGLEP
LLLIAICFSLCIVPISLTRRLHPAPLVPAPLKIAHYWKKAPQALTTIAIGSMIVGSFYGLAPAYASNLGLPPEKVATYMT
ATILAGLLAQWPMGKLSDIMSRSRLIRINCILLGILALAIALTPYHPVISLVMTFLFGILGFTFYPLATALANSRVEQNE
RVGLSATILLTFGLGASIGPLIASTLMQWLGNSMLYGFMSACTLILFVRLRYVHSQQKVETNVTQDYIMATGDLVSSPLA
AALDPRVDVESIQEHMTPSANLDESEHDLGADGVDDDIIDENDSDEEQLAFSFDIEQAEPEAVLTDEADSHQVNLDKALT
>Mature_479_residues
TNPLRTFASLYSTTLLMVLAGGLLTTYLGLRLSVMNVPQIWIGGMMSAYYVGLVAGSKIGHRLIAQVGHIRAFVASAGIV
AASALGHALVDELAVWLLLRLVVGMGMMCQYMVLESWLNEQAESNQRGTVFASYMIVSYFGLILGQGAISIFPELGLEPL
LLIAICFSLCIVPISLTRRLHPAPLVPAPLKIAHYWKKAPQALTTIAIGSMIVGSFYGLAPAYASNLGLPPEKVATYMTA
TILAGLLAQWPMGKLSDIMSRSRLIRINCILLGILALAIALTPYHPVISLVMTFLFGILGFTFYPLATALANSRVEQNER
VGLSATILLTFGLGASIGPLIASTLMQWLGNSMLYGFMSACTLILFVRLRYVHSQQKVETNVTQDYIMATGDLVSSPLAA
ALDPRVDVESIQEHMTPSANLDESEHDLGADGVDDDIIDENDSDEEQLAFSFDIEQAEPEAVLTDEADSHQVNLDKALT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=336, Percent_Identity=28.2738095238095, Blast_Score=133, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 51869; Mature: 51738

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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>Mature Secondary Structure 
TNPLRTFASLYSTTLLMVLAGGLLTTYLGLRLSVMNVPQIWIGGMMSAYYVGLVAGSKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHH
GHRLIAQVGHIRAFVASAGIVAASALGHALVDELAVWLLLRLVVGMGMMCQYMVLESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQAESNQRGTVFASYMIVSYFGLILGQGAISIFPELGLEPLLLIAICFSLCIVPISLTRR
HHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
LHPAPLVPAPLKIAHYWKKAPQALTTIAIGSMIVGSFYGLAPAYASNLGLPPEKVATYMT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ATILAGLLAQWPMGKLSDIMSRSRLIRINCILLGILALAIALTPYHPVISLVMTFLFGIL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GFTFYPLATALANSRVEQNERVGLSATILLTFGLGASIGPLIASTLMQWLGNSMLYGFMS
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ACTLILFVRLRYVHSQQKVETNVTQDYIMATGDLVSSPLAAALDPRVDVESIQEHMTPSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCC
NLDESEHDLGADGVDDDIIDENDSDEEQLAFSFDIEQAEPEAVLTDEADSHQVNLDKALT
CCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCEEECCCCCCCEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA