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The map label for this gene is orn [H]

Identifier: 126175802

GI number: 126175802

Start: 4234814

End: 4235428

Strand: Reverse

Name: orn [H]

Synonym: Sbal_3607

Alternate gene names: 126175802

Gene position: 4235428-4234814 (Counterclockwise)

Preceding gene: 126175803

Following gene: 126175801

Centisome position: 82.6

GC content: 47.15

Gene sequence:

>615_bases
ATGGAGCAATTCTTTTTGTTTGGTGATTTAGAAACGGGTGGGCTGAACGGCCGCTTAGACAATGGGATGCTGGGTATGGA
GTATTACCCTATCTTTGAGCTGGCCTTTATCGTGACTGATAGTGAGCTAAACCAAGTGGGTGAAGCGCTGCACGTTGTTG
TGCATCAAGACGATGAACACATTGCAAGGTCACATGAGTGGGCGATAGATGTGCATACCAAGAGTGGGTTGTTAGCTGCT
GTTCGTGCCTCATCAGTATCGTTAGCACAGGCTGAGCAGATGGTTATCGAACACCTGAAAGCACTGGGAATACCTAAGCA
TGACCGTAAAGCTAAGACTGGTGTGGTGTTTGCGGGTAACTCAATCATGTTTGATCGTTCGTTTATCATGTGCCAAATGC
CTGAGCTTCATGAGTACATGCATTACAGGCAGCTAGACATATCAGCACTAGGGCTCGCAGCTAGAGCTTGGGCGCCTGAG
GTTGAGCGTAATGCGATTAAGGCTAAGCAGTATCAGCATGAAGCCTTAGCCGATATTCGGGAGTCGATAGCGGAACTCAA
GTACTATCGCGACGAGTTGTTTGGTTGTGAAATATCATCTTTGTCAATAGGTTAG

Upstream 100 bases:

>100_bases
TGTGCAAAGGCCAGTGGGCATTGATGGGGTTCGATAGCAAGAAGTCGTATGTGTATTGGTTGAGAAGGGCAGAGATTCAA
TTAGCAAAGTGAGGTGGGTG

Downstream 100 bases:

>100_bases
GCGCGGCCTGTTCAAATGAGAATGGCTATCATCAGAGCTAGATGCGACCTATTATCATCACGGGTCCTTCCGGCTGCCTT
CACTGCGGGGGCAGTGACGC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHVVVHQDDEHIARSHEWAIDVHTKSGLLAA
VRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAGNSIMFDRSFIMCQMPELHEYMHYRQLDISALGLAARAWAPE
VERNAIKAKQYQHEALADIRESIAELKYYRDELFGCEISSLSIG

Sequences:

>Translated_204_residues
MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHVVVHQDDEHIARSHEWAIDVHTKSGLLAA
VRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAGNSIMFDRSFIMCQMPELHEYMHYRQLDISALGLAARAWAPE
VERNAIKAKQYQHEALADIRESIAELKYYRDELFGCEISSLSIG
>Mature_204_residues
MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHVVVHQDDEHIARSHEWAIDVHTKSGLLAA
VRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAGNSIMFDRSFIMCQMPELHEYMHYRQLDISALGLAARAWAPE
VERNAIKAKQYQHEALADIRESIAELKYYRDELFGCEISSLSIG

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=195, Percent_Identity=34.8717948717949, Blast_Score=110, Evalue=7e-25,
Organism=Escherichia coli, GI87082382, Length=190, Percent_Identity=40.5263157894737, Blast_Score=125, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17557752, Length=194, Percent_Identity=37.1134020618557, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=34.0659340659341, Blast_Score=89, Evalue=4e-19,
Organism=Drosophila melanogaster, GI21355135, Length=194, Percent_Identity=34.5360824742268, Blast_Score=109, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 22952; Mature: 22952

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHVVVHQDDEH
CCCEEEEECCCCCCCCCCCCCCEECCEECCCEEEEEEEECHHHHHHHHHEEEEEECCCHH
IARSHEWAIDVHTKSGLLAAVRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAGN
HHCCCCEEEEEECCCCEEEEHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
SIMFDRSFIMCQMPELHEYMHYRQLDISALGLAARAWAPEVERNAIKAKQYQHEALADIR
EEEEECCEEEEECHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ESIAELKYYRDELFGCEISSLSIG
HHHHHHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHVVVHQDDEH
CCCEEEEECCCCCCCCCCCCCCEECCEECCCEEEEEEEECHHHHHHHHHEEEEEECCCHH
IARSHEWAIDVHTKSGLLAAVRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAGN
HHCCCCEEEEEECCCCEEEEHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
SIMFDRSFIMCQMPELHEYMHYRQLDISALGLAARAWAPEVERNAIKAKQYQHEALADIR
EEEEECCEEEEECHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ESIAELKYYRDELFGCEISSLSIG
HHHHHHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA