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The map label for this gene is dcrA [H]

Identifier: 126175760

GI number: 126175760

Start: 4187862

End: 4189451

Strand: Reverse

Name: dcrA [H]

Synonym: Sbal_3564

Alternate gene names: 126175760

Gene position: 4189451-4187862 (Counterclockwise)

Preceding gene: 126175762

Following gene: 126175750

Centisome position: 81.71

GC content: 46.54

Gene sequence:

>1590_bases
ATGGATTCTAATAAAAGTCGGAAGGATTCAATGGGATATAATTCTATCTTTGCGCCACTGCTGTTGCTGATTTATCCACT
CTATTGTTTAGTGATCACAGGGCACTTTGTCGCCATCCTGTGTTTAAGCGCGCTCGCCGGCATTTTAATGTTCAACATCA
ATAAATTAATTCGCAATTTAAGACAGCTTGAACGTGCCGCCCATCATTTAGGCGAGGGAGATTTAAGCTATCAATTAGAA
GAGAAAGATGCGGGCGTGTTCATTAAGGTCGTGCATAGCATCAACCGCATGGGCGAGGATGTCAGCCGCACGATTTTATC
TTTGTCTGATACCTGCGAAGGGATGAAAAAAGTGGCCTCGGATATCAAGGTCATCAGTGAACAGGCAAAACAAGGGGTGT
TAGAGCAAGAGCATCAAACGGAACTGGCCGCCAGTGCGATGACGCAAATGGTATCAAGCGTGCAAGCGGTGTCGCAAAAT
GCCGTGAGTGCGGCCAAGGCTGCCGATATTGCCCAAAGTTCTGCCAAGCATGGCGACCAAATCATGAATGGCATAGTGAC
TAAAATTGGCGCTATGTCAGCACAGATCCATGACACTCGAACTGTAATTGAACACTTGGCCGCCGACAGCAACAATATCA
GTAGTATTATCGAAACGATTTCGCAGGTGGCTGAGCAAACCAACTTACTCGCCTTAAACGCCGCCATTGAAAGTGCGAGA
GCCGGTGAGCATGGTCGCGGCTTTGCCGTTGTCGCCGATGAAGTGCGTAATCTTGCGAAACGGACATCTGAAGCCACGGT
TGAGATCCAACAACAAATCGCCGCATTACAAAAAGGTGCACAACATGGCGTTGAAGTCATGTTGAAAAACGTGGTCATTG
CCGACGAAACCGCTGAGATGGTGAATCAAGCCCACAGCGCGCTCGGACAAATCGTCACGCAGGTGGAGACCATTACCGAT
ATGTCCCATCAAATCGCCACGGCATCGGGGCAACAATACACAGTTGCTGAAGAAATTAATAAAAATATCACTGTGATGGC
AGAGCTCGCCCTGAGTAATGCGTCACACACCAACAACACTAACTTATCGAGTTTGAAAGTGTATAACATGTCGCAGGAAA
TCGGCTCCTTGCTGCACCGATTCCATGTGAATGCGGCATTCTTTAACTCGACTCAGGCGCAAAATAAACTGTTTGTGAAA
TGGGGGCCTGAGTTAGACATAGGGATGCCAGAGATCAATCGTCAACATCAACGATTAGTGTCGCTGATCAATGAACTGCA
TCGCACATTAAACGAAGAGTATGGACTCGAAGCCATCAAACGTATCGTGCAAGGGTTGGTGGATTACACCGCCAATCACT
TTGCCTATGAAGAAGAGCTCTTTGCCCGCTTTGGTTACCCACAAACCGACAGTCATAAGGAAAAGCACGGCAAGTTAGTC
GGGCAAGTACTTGATTTTCAAAAGCGGGTTGTAAAAGGGGAAGATGTTGCCGACGAATTAATGACTTTCTTGAAGGCTTG
GTTGGTTAATCATATCCAAAAAAGTGATAAAGAATATACCGCCTTTTTGTTATCCCATGGTGCAGAATAA

Upstream 100 bases:

>100_bases
TACTTAACCAGATCGATATTTTGTTATCGCACCATGCTATTTATTTGTTCTTGTTTTTTTAGATGAATGCTGTGATATCA
GTTTTTTAAAGGAGTAAAAA

Downstream 100 bases:

>100_bases
CCCCAAGAGCATGATTTTTGAGCGGTTAAATGCAATTTGTATTAAAGTCGCGGCAAAAGACTTGCCATTGTCATGGGCAA
AGGTATAATTCCCAGCACTT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MDSNKSRKDSMGYNSIFAPLLLLIYPLYCLVITGHFVAILCLSALAGILMFNINKLIRNLRQLERAAHHLGEGDLSYQLE
EKDAGVFIKVVHSINRMGEDVSRTILSLSDTCEGMKKVASDIKVISEQAKQGVLEQEHQTELAASAMTQMVSSVQAVSQN
AVSAAKAADIAQSSAKHGDQIMNGIVTKIGAMSAQIHDTRTVIEHLAADSNNISSIIETISQVAEQTNLLALNAAIESAR
AGEHGRGFAVVADEVRNLAKRTSEATVEIQQQIAALQKGAQHGVEVMLKNVVIADETAEMVNQAHSALGQIVTQVETITD
MSHQIATASGQQYTVAEEINKNITVMAELALSNASHTNNTNLSSLKVYNMSQEIGSLLHRFHVNAAFFNSTQAQNKLFVK
WGPELDIGMPEINRQHQRLVSLINELHRTLNEEYGLEAIKRIVQGLVDYTANHFAYEEELFARFGYPQTDSHKEKHGKLV
GQVLDFQKRVVKGEDVADELMTFLKAWLVNHIQKSDKEYTAFLLSHGAE

Sequences:

>Translated_529_residues
MDSNKSRKDSMGYNSIFAPLLLLIYPLYCLVITGHFVAILCLSALAGILMFNINKLIRNLRQLERAAHHLGEGDLSYQLE
EKDAGVFIKVVHSINRMGEDVSRTILSLSDTCEGMKKVASDIKVISEQAKQGVLEQEHQTELAASAMTQMVSSVQAVSQN
AVSAAKAADIAQSSAKHGDQIMNGIVTKIGAMSAQIHDTRTVIEHLAADSNNISSIIETISQVAEQTNLLALNAAIESAR
AGEHGRGFAVVADEVRNLAKRTSEATVEIQQQIAALQKGAQHGVEVMLKNVVIADETAEMVNQAHSALGQIVTQVETITD
MSHQIATASGQQYTVAEEINKNITVMAELALSNASHTNNTNLSSLKVYNMSQEIGSLLHRFHVNAAFFNSTQAQNKLFVK
WGPELDIGMPEINRQHQRLVSLINELHRTLNEEYGLEAIKRIVQGLVDYTANHFAYEEELFARFGYPQTDSHKEKHGKLV
GQVLDFQKRVVKGEDVADELMTFLKAWLVNHIQKSDKEYTAFLLSHGAE
>Mature_529_residues
MDSNKSRKDSMGYNSIFAPLLLLIYPLYCLVITGHFVAILCLSALAGILMFNINKLIRNLRQLERAAHHLGEGDLSYQLE
EKDAGVFIKVVHSINRMGEDVSRTILSLSDTCEGMKKVASDIKVISEQAKQGVLEQEHQTELAASAMTQMVSSVQAVSQN
AVSAAKAADIAQSSAKHGDQIMNGIVTKIGAMSAQIHDTRTVIEHLAADSNNISSIIETISQVAEQTNLLALNAAIESAR
AGEHGRGFAVVADEVRNLAKRTSEATVEIQQQIAALQKGAQHGVEVMLKNVVIADETAEMVNQAHSALGQIVTQVETITD
MSHQIATASGQQYTVAEEINKNITVMAELALSNASHTNNTNLSSLKVYNMSQEIGSLLHRFHVNAAFFNSTQAQNKLFVK
WGPELDIGMPEINRQHQRLVSLINELHRTLNEEYGLEAIKRIVQGLVDYTANHFAYEEELFARFGYPQTDSHKEKHGKLV
GQVLDFQKRVVKGEDVADELMTFLKAWLVNHIQKSDKEYTAFLLSHGAE

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=329, Percent_Identity=29.1793313069909, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI2367378, Length=313, Percent_Identity=28.7539936102236, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1788195, Length=266, Percent_Identity=32.7067669172932, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI1788194, Length=293, Percent_Identity=29.3515358361775, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1789453, Length=327, Percent_Identity=28.4403669724771, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 58207; Mature: 58207

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS50885 HAMP ; PS00550 HEMERYTHRINS ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSNKSRKDSMGYNSIFAPLLLLIYPLYCLVITGHFVAILCLSALAGILMFNINKLIRNL
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQLERAAHHLGEGDLSYQLEEKDAGVFIKVVHSINRMGEDVSRTILSLSDTCEGMKKVAS
HHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIKVISEQAKQGVLEQEHQTELAASAMTQMVSSVQAVSQNAVSAAKAADIAQSSAKHGDQ
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMNGIVTKIGAMSAQIHDTRTVIEHLAADSNNISSIIETISQVAEQTNLLALNAAIESAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AGEHGRGFAVVADEVRNLAKRTSEATVEIQQQIAALQKGAQHGVEVMLKNVVIADETAEM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VNQAHSALGQIVTQVETITDMSHQIATASGQQYTVAEEINKNITVMAELALSNASHTNNT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCEEHHHHHHCCCCCCCCC
NLSSLKVYNMSQEIGSLLHRFHVNAAFFNSTQAQNKLFVKWGPELDIGMPEINRQHQRLV
CCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH
SLINELHRTLNEEYGLEAIKRIVQGLVDYTANHFAYEEELFARFGYPQTDSHKEKHGKLV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
GQVLDFQKRVVKGEDVADELMTFLKAWLVNHIQKSDKEYTAFLLSHGAE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MDSNKSRKDSMGYNSIFAPLLLLIYPLYCLVITGHFVAILCLSALAGILMFNINKLIRNL
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQLERAAHHLGEGDLSYQLEEKDAGVFIKVVHSINRMGEDVSRTILSLSDTCEGMKKVAS
HHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIKVISEQAKQGVLEQEHQTELAASAMTQMVSSVQAVSQNAVSAAKAADIAQSSAKHGDQ
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMNGIVTKIGAMSAQIHDTRTVIEHLAADSNNISSIIETISQVAEQTNLLALNAAIESAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AGEHGRGFAVVADEVRNLAKRTSEATVEIQQQIAALQKGAQHGVEVMLKNVVIADETAEM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VNQAHSALGQIVTQVETITDMSHQIATASGQQYTVAEEINKNITVMAELALSNASHTNNT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCEEHHHHHHCCCCCCCCC
NLSSLKVYNMSQEIGSLLHRFHVNAAFFNSTQAQNKLFVKWGPELDIGMPEINRQHQRLV
CCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH
SLINELHRTLNEEYGLEAIKRIVQGLVDYTANHFAYEEELFARFGYPQTDSHKEKHGKLV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
GQVLDFQKRVVKGEDVADELMTFLKAWLVNHIQKSDKEYTAFLLSHGAE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]