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The map label for this gene is yafC [H]

Identifier: 126175566

GI number: 126175566

Start: 3939109

End: 3940128

Strand: Reverse

Name: yafC [H]

Synonym: Sbal_3369

Alternate gene names: 126175566

Gene position: 3940128-3939109 (Counterclockwise)

Preceding gene: 126175569

Following gene: 126175564

Centisome position: 76.84

GC content: 47.84

Gene sequence:

>1020_bases
ATGAATTGTTTCTTTACTGGAACCAATATGGCTATCGATACTTCGGCATTGCACCTGCAATTACCTAATTTATATATATT
TCGTTGTGTCACTCAGTTAGGCAGTTTTCAAGCCGCTGCTGATGCGCTGCAATTGCCTCGTTCGTCCGTTAGTAAGAAAA
TTGCCCAGCTTGAACACCAACTTGGGCTTAGGTTGTTACAGCGCAGTACGCGCCAGCTCAATTTAACCGATTCGGGTACT
GAGTTGCTGGCCATCACCGATTCACTAACAGAATTGCTTAGCAATACCGCTAAGCTCACCGAGCAAGCGCAAGCTAAACC
CAGTGGGCGGGTAAAAATCAGTAGCTCAACCATCCTAGGTCAACGCTATCTGCTGCCTTTACTGCCTAAGCTGAAACAAC
TTTTTCCCGAGATAGTGATAGACATCAATCTTGATGATCGCGTGGTCGATTTAATTGAGCTAGGGATAGATATTGCGCTG
CGGGTCGGTGAGTTGCCCGATTCTTCATTGGTCGCGCGCCGTATCGGTACGAAATCATGGTCCTGTTTTGCCAGTCCCGC
CTACCTTAAGCAGGCCGCTAAACTTGAGGTGCCCAGCGATTTAGCCGCGCATCAATGTTTAATCTTTCGTCATCAAAAGC
TCGCCATGGATTGTTGGCACTTTCGTAGCCCAAATGGCGAAATTGAAACTCAACACATTGTGGCATCAAGCTCCACGGAT
GATGGCCGAACCTTAGTCGAACTTGCTTGTATGGGCATGGGGATCATTCGGGTCGACCCCATGTTAATTCAGCCAGAACT
GAGAGCCAGCCAGCTAGTACCAGTGTTAGCCAAGTGGCAACACACAGATCCTGCGCCGATTCATTTAGTGTGTTTAGGAA
AAGATGCGCGAAGCCGCGCCGTCAACGAAGTGTGGCAATATTTAAGTGAACACCTCAGTCAAGCACTCGCTGCCGTAGAA
AGTGACACCAATCGCTCATCAGTTATGAGGCATAACACTTATCTGTTAGAGGTTGAATAG

Upstream 100 bases:

>100_bases
TGTGTGCTCCTGATGAGTGATGAGTCCGTGGTGAGTCATGAAGCTTGACGCAGAAAAGCATAACTCGGAGAATGGTTTCC
AATAAGGTATGTAATAAGAA

Downstream 100 bases:

>100_bases
GCTTAATTTTTTCACTGCGAAAAGTTAGCTCTAATGCCACAGACGTTCACCGATCCCCTGCGAAGTTGCTGCGTAGCTTT
CGGGGACGGGGCGAATGGAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MNCFFTGTNMAIDTSALHLQLPNLYIFRCVTQLGSFQAAADALQLPRSSVSKKIAQLEHQLGLRLLQRSTRQLNLTDSGT
ELLAITDSLTELLSNTAKLTEQAQAKPSGRVKISSSTILGQRYLLPLLPKLKQLFPEIVIDINLDDRVVDLIELGIDIAL
RVGELPDSSLVARRIGTKSWSCFASPAYLKQAAKLEVPSDLAAHQCLIFRHQKLAMDCWHFRSPNGEIETQHIVASSSTD
DGRTLVELACMGMGIIRVDPMLIQPELRASQLVPVLAKWQHTDPAPIHLVCLGKDARSRAVNEVWQYLSEHLSQALAAVE
SDTNRSSVMRHNTYLLEVE

Sequences:

>Translated_339_residues
MNCFFTGTNMAIDTSALHLQLPNLYIFRCVTQLGSFQAAADALQLPRSSVSKKIAQLEHQLGLRLLQRSTRQLNLTDSGT
ELLAITDSLTELLSNTAKLTEQAQAKPSGRVKISSSTILGQRYLLPLLPKLKQLFPEIVIDINLDDRVVDLIELGIDIAL
RVGELPDSSLVARRIGTKSWSCFASPAYLKQAAKLEVPSDLAAHQCLIFRHQKLAMDCWHFRSPNGEIETQHIVASSSTD
DGRTLVELACMGMGIIRVDPMLIQPELRASQLVPVLAKWQHTDPAPIHLVCLGKDARSRAVNEVWQYLSEHLSQALAAVE
SDTNRSSVMRHNTYLLEVE
>Mature_339_residues
MNCFFTGTNMAIDTSALHLQLPNLYIFRCVTQLGSFQAAADALQLPRSSVSKKIAQLEHQLGLRLLQRSTRQLNLTDSGT
ELLAITDSLTELLSNTAKLTEQAQAKPSGRVKISSSTILGQRYLLPLLPKLKQLFPEIVIDINLDDRVVDLIELGIDIAL
RVGELPDSSLVARRIGTKSWSCFASPAYLKQAAKLEVPSDLAAHQCLIFRHQKLAMDCWHFRSPNGEIETQHIVASSSTD
DGRTLVELACMGMGIIRVDPMLIQPELRASQLVPVLAKWQHTDPAPIHLVCLGKDARSRAVNEVWQYLSEHLSQALAAVE
SDTNRSSVMRHNTYLLEVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=29.7945205479452, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=30.952380952381, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=30.7692307692308, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787128, Length=276, Percent_Identity=28.2608695652174, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=25.938566552901, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1789440, Length=262, Percent_Identity=27.8625954198473, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787589, Length=189, Percent_Identity=28.042328042328, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790011, Length=274, Percent_Identity=24.4525547445255, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=265, Percent_Identity=26.7924528301887, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=25.1968503937008, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790262, Length=243, Percent_Identity=24.6913580246914, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37595; Mature: 37595

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCFFTGTNMAIDTSALHLQLPNLYIFRCVTQLGSFQAAADALQLPRSSVSKKIAQLEHQ
CCEEEECCCCEEECCEEEEECCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHH
LGLRLLQRSTRQLNLTDSGTELLAITDSLTELLSNTAKLTEQAQAKPSGRVKISSSTILG
HHHHHHHCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHH
QRYLLPLLPKLKQLFPEIVIDINLDDRVVDLIELGIDIALRVGELPDSSLVARRIGTKSW
HHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHCHHHEEEECCCCCHHHHHHHHCCCCC
SCFASPAYLKQAAKLEVPSDLAAHQCLIFRHQKLAMDCWHFRSPNGEIETQHIVASSSTD
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
DGRTLVELACMGMGIIRVDPMLIQPELRASQLVPVLAKWQHTDPAPIHLVCLGKDARSRA
CCHHHHHHHHHCCCEEEECCEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
VNEVWQYLSEHLSQALAAVESDTNRSSVMRHNTYLLEVE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHEECCEEEEEEC
>Mature Secondary Structure
MNCFFTGTNMAIDTSALHLQLPNLYIFRCVTQLGSFQAAADALQLPRSSVSKKIAQLEHQ
CCEEEECCCCEEECCEEEEECCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHH
LGLRLLQRSTRQLNLTDSGTELLAITDSLTELLSNTAKLTEQAQAKPSGRVKISSSTILG
HHHHHHHCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHH
QRYLLPLLPKLKQLFPEIVIDINLDDRVVDLIELGIDIALRVGELPDSSLVARRIGTKSW
HHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHCHHHEEEECCCCCHHHHHHHHCCCCC
SCFASPAYLKQAAKLEVPSDLAAHQCLIFRHQKLAMDCWHFRSPNGEIETQHIVASSSTD
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
DGRTLVELACMGMGIIRVDPMLIQPELRASQLVPVLAKWQHTDPAPIHLVCLGKDARSRA
CCHHHHHHHHHCCCEEEECCEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHH
VNEVWQYLSEHLSQALAAVESDTNRSSVMRHNTYLLEVE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]